/home/llmeval/.local/share/uv/tools/cubbi/lib/python3.12/site-packages/click/core.py:1213: UserWarning: The parameter -m is used more than once. Remove its duplicate as parameters should be unique.
  parser = self.make_parser(ctx)
/home/llmeval/.local/share/uv/tools/cubbi/lib/python3.12/site-packages/click/core.py:1206: UserWarning: The parameter -m is used more than once. Remove its duplicate as parameters should be unique.
  self.parse_args(ctx, args)
Using UID: 1000, GID: 1000
Forwarding environment variable OPENROUTER_API_KEY to container
Mounting local directory /home/llmeval/llmeval/runs/run_20260203_150253/task8_regex_extraction/openrouter-google-gemini-2.5-flash-preview-09-2025/workspace to /app
No project_name provided - skipping configuration directory setup.
Session created successfully!
Session ID: d3e6a315
Image: opencode
Executing command and waiting for completion...
Container will exit after command completes.
Command logs:
Initializing opencode v1.0.0
Setting up user 'cubbi' with UID: 1000, GID: 1000
Setting up standard directories
Created directory: /app
Created directory: /cubbi-config
Created directory: /cubbi-config/home
Creating /home/cubbi as symlink to /cubbi-config/home
Created directory: /cubbi-config/home/.local
Copied /root/.local/bin to user directory
Running opencode-specific initialization
Added litellm custom provider with 153 models to OpenCode configuration
Added openrouter standard provider with 347 models to OpenCode configuration
Set default model to openrouter/google/gemini-2.5-flash-preview-09-2025
Updated OpenCode configuration at /home/cubbi/.config/opencode/config.json with 2 providers
No MCP servers to integrate
--- Executing initial command ---
Executing user command:
    if [ -f install.sh ]; then bash install.sh; fi;
    echo "--- TASK BEGIN ---"; cat task.md; echo "--- TASK END ---";
    cd input && opencode run --print-logs < ../task.md

Executing as cubbi: sh -c
    if [ -f install.sh ]; then bash install.sh; fi;
    echo "--- TASK BEGIN ---"; cat task.md; echo "--- TASK END ---";
    cd input && opencode run --print-logs < ../task.md

--- TASK BEGIN ---
You'll find a text file called `mixed_content.txt` in current directory containing various types of data mixed together.

Extract ALL instances of the following patterns using regular expressions:

- Email addresses
- Phone numbers (various formats: (123) 456-7890, 123-456-7890, 123.456.7890)
- URLs (http and https)
- Dates (formats: YYYY-MM-DD, MM/DD/YYYY, DD-MM-YYYY)

Generate a JSON file called `extracted_data.json` with the following structure:

```json
{
  "emails": [
    "email1@example.com",
    "email2@example.com",
    ...
  ],
  "phone_numbers": [
    "(123) 456-7890",
    "123-456-7890",
    ...
  ],
  "urls": [
    "https://example.com",
    "http://example.org",
    ...
  ],
  "dates": [
    "2024-01-15",
    "01/15/2024",
    ...
  ]
}
```

Each array should contain the extracted values in the order they appear in the file. Duplicates should be included if they appear multiple times.

PS: You are currently working in an automated system and cannot ask any question or have back and forth with an user.
--- TASK END ---
INFO  2026-02-03T16:41:19 +1087ms service=default version=1.1.49 args=["run","--print-logs"] opencode
INFO  2026-02-03T16:41:19 +2ms service=default directory=/app/input creating instance
INFO  2026-02-03T16:41:19 +0ms service=project directory=/app/input fromDirectory
INFO  2026-02-03T16:41:19 +22ms service=storage index=0 running migration
INFO  2026-02-03T16:41:19 +4ms service=storage index=1 running migration
INFO  2026-02-03T16:41:19 +9ms service=default directory=/app/input bootstrapping
INFO  2026-02-03T16:41:20 +17ms service=config path=/home/cubbi/.config/opencode/config.json loading
INFO  2026-02-03T16:41:20 +165ms service=config path=/home/cubbi/.config/opencode/opencode.json loading
INFO  2026-02-03T16:41:20 +17ms service=config path=/home/cubbi/.config/opencode/opencode.jsonc loading
INFO  2026-02-03T16:41:20 +15ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","add","@opencode-ai/plugin@1.1.49","--exact"] cwd=/home/cubbi/.config/opencode running
INFO  2026-02-03T16:41:21 +835ms service=bun code=0 stdout=bun add v1.3.5 (1e86cebd)

installed @opencode-ai/plugin@1.1.49

3 packages installed [796.00ms]
 stderr=Resolving dependencies
Resolved, downloaded and extracted [12]
Saved lockfile
 done
INFO  2026-02-03T16:41:21 +0ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","install"] cwd=/home/cubbi/.config/opencode running
INFO  2026-02-03T16:41:21 +20ms service=bun code=0 stdout=bun install v1.3.5 (1e86cebd)

Checked 3 installs across 4 packages (no changes) [3.00ms]
 stderr= done
INFO  2026-02-03T16:41:21 +31ms service=plugin name=CodexAuthPlugin loading internal plugin
INFO  2026-02-03T16:41:21 +3ms service=plugin name=CopilotAuthPlugin loading internal plugin
INFO  2026-02-03T16:41:21 +0ms service=plugin path=opencode-anthropic-auth@0.0.13 loading plugin
INFO  2026-02-03T16:41:21 +12ms service=bun pkg=opencode-anthropic-auth version=0.0.13 installing package using Bun's default registry resolution
INFO  2026-02-03T16:41:21 +1ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","add","--force","--exact","--cwd","/home/cubbi/.cache/opencode","opencode-anthropic-auth@0.0.13"] cwd=/home/cubbi/.cache/opencode running
INFO  2026-02-03T16:41:22 +946ms service=bun code=0 stdout=bun add v1.3.5 (1e86cebd)

installed opencode-anthropic-auth@0.0.13

13 packages installed [920.00ms]
 stderr=Resolving dependencies
Resolved, downloaded and extracted [50]
Saved lockfile
 done
INFO  2026-02-03T16:41:22 +136ms service=plugin path=@gitlab/opencode-gitlab-auth@1.3.2 loading plugin
INFO  2026-02-03T16:41:22 +15ms service=bun pkg=@gitlab/opencode-gitlab-auth version=1.3.2 installing package using Bun's default registry resolution
INFO  2026-02-03T16:41:22 +1ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","add","--force","--exact","--cwd","/home/cubbi/.cache/opencode","@gitlab/opencode-gitlab-auth@1.3.2"] cwd=/home/cubbi/.cache/opencode running
INFO  2026-02-03T16:41:23 +1102ms service=bun code=0 stdout=bun add v1.3.5 (1e86cebd)

+ opencode-anthropic-auth@0.0.13

installed @gitlab/opencode-gitlab-auth@1.3.2

77 packages installed [1079.00ms]
 stderr=Resolving dependencies
Resolved, downloaded and extracted [243]
Saved lockfile
 done
INFO  2026-02-03T16:41:23 +133ms service=bus type=* subscribing
INFO  2026-02-03T16:41:23 +1ms service=bus type=session.updated subscribing
INFO  2026-02-03T16:41:23 +0ms service=bus type=message.updated subscribing
INFO  2026-02-03T16:41:23 +0ms service=bus type=message.part.updated subscribing
INFO  2026-02-03T16:41:23 +0ms service=bus type=session.updated subscribing
INFO  2026-02-03T16:41:23 +0ms service=bus type=message.updated subscribing
INFO  2026-02-03T16:41:23 +1ms service=bus type=message.part.updated subscribing
INFO  2026-02-03T16:41:23 +0ms service=bus type=session.diff subscribing
INFO  2026-02-03T16:41:23 +0ms service=format init
INFO  2026-02-03T16:41:23 +0ms service=bus type=file.edited subscribing
INFO  2026-02-03T16:41:23 +2ms service=lsp serverIds=deno, typescript, vue, eslint, oxlint, biome, gopls, ruby-lsp, pyright, elixir-ls, zls, csharp, fsharp, sourcekit-lsp, rust, clangd, svelte, astro, jdtls, kotlin-ls, yaml-ls, lua-ls, php intelephense, prisma, dart, ocaml-lsp, bash, terraform, texlab, dockerfile, gleam, clojure-lsp, nixd, tinymist, haskell-language-server enabled LSP servers
INFO  2026-02-03T16:41:23 +5ms service=scheduler id=snapshot.cleanup run
INFO  2026-02-03T16:41:23 +1ms service=scheduler id=tool.truncation.cleanup run
INFO  2026-02-03T16:41:23 +0ms service=bus type=command.executed subscribing
INFO  2026-02-03T16:41:23 +77ms service=server method=POST path=/session request
INFO  2026-02-03T16:41:23 +1ms service=server status=started method=POST path=/session request
INFO  2026-02-03T16:41:23 +6ms service=session id=ses_3db9eaeb1ffet4d7anYUy7IO7J slug=crisp-rocket version=1.1.49 projectID=global directory=/app/input title=New session - 2026-02-03T16:41:23.534Z time={"created":1770136883534,"updated":1770136883534} created
INFO  2026-02-03T16:41:23 +12ms service=bus type=session.created publishing
INFO  2026-02-03T16:41:23 +1ms service=bus type=session.updated publishing
INFO  2026-02-03T16:41:23 +18ms service=server status=completed duration=37 method=POST path=/session request
INFO  2026-02-03T16:41:23 +4ms service=server method=GET path=/config request
INFO  2026-02-03T16:41:23 +0ms service=server status=started method=GET path=/config request
INFO  2026-02-03T16:41:23 +2ms service=server status=completed duration=2 method=GET path=/config request
INFO  2026-02-03T16:41:23 +9ms service=server method=GET path=/event request
INFO  2026-02-03T16:41:23 +0ms service=server status=started method=GET path=/event request
INFO  2026-02-03T16:41:23 +5ms service=server method=POST path=/session/ses_3db9eaeb1ffet4d7anYUy7IO7J/message request
INFO  2026-02-03T16:41:23 +0ms service=server status=started method=POST path=/session/ses_3db9eaeb1ffet4d7anYUy7IO7J/message request
INFO  2026-02-03T16:41:23 +1ms service=server event connected
INFO  2026-02-03T16:41:23 +3ms service=bus type=* subscribing
INFO  2026-02-03T16:41:23 +17ms service=server status=completed duration=26 method=GET path=/event request
INFO  2026-02-03T16:41:23 +2ms service=server status=completed duration=23 method=POST path=/session/ses_3db9eaeb1ffet4d7anYUy7IO7J/message request
INFO  2026-02-03T16:41:23 +45ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:23 +12ms service=provider status=started state
INFO  2026-02-03T16:41:23 +73ms service=provider init
INFO  2026-02-03T16:41:23 +11ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:23 +7ms service=bus type=session.updated publishing
INFO  2026-02-03T16:41:23 +37ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:23 +0ms service=session.prompt step=0 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J loop
INFO  2026-02-03T16:41:23 +90ms service=provider providerID=openrouter found
INFO  2026-02-03T16:41:23 +6ms service=provider providerID=opencode found
INFO  2026-02-03T16:41:23 +0ms service=provider providerID=litellm found
INFO  2026-02-03T16:41:23 +1ms service=provider status=completed duration=225 state
INFO  2026-02-03T16:41:23 +19ms service=llm providerID=openrouter modelID=anthropic/claude-haiku-4.5 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J small=true agent=title mode=primary stream
INFO  2026-02-03T16:41:23 +1ms service=provider status=started providerID=openrouter getSDK
INFO  2026-02-03T16:41:23 +0ms service=provider providerID=openrouter pkg=@ai-sdk/openai-compatible using bundled provider
INFO  2026-02-03T16:41:23 +15ms service=provider status=completed duration=15 providerID=openrouter getSDK
INFO  2026-02-03T16:41:23 +2ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:23 +9ms service=session.prompt status=started resolveTools
INFO  2026-02-03T16:41:24 +89ms service=tool.registry status=started invalid
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=started question
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=started bash
INFO  2026-02-03T16:41:24 +1ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-02-03T16:41:24 +1ms service=tool.registry status=started read
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=started glob
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=started grep
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=started edit
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=started write
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=started task
INFO  2026-02-03T16:41:24 +7ms service=tool.registry status=started webfetch
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=started todowrite
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=started todoread
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=started skill
INFO  2026-02-03T16:41:24 +2ms service=tool.registry status=completed duration=11 invalid
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=completed duration=11 question
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=completed duration=9 read
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=completed duration=9 glob
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=completed duration=9 grep
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=completed duration=9 edit
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=completed duration=9 write
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=completed duration=2 webfetch
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=completed duration=2 todowrite
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=completed duration=2 todoread
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=completed duration=11 bash
INFO  2026-02-03T16:41:24 +6ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:24 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:24 +0ms service=tool.registry status=completed duration=15 task
INFO  2026-02-03T16:41:24 +47ms service=tool.registry status=completed duration=55 skill
INFO  2026-02-03T16:41:24 +37ms service=session.prompt status=completed duration=175 resolveTools
INFO  2026-02-03T16:41:24 +51ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:24 +2ms service=llm providerID=openrouter modelID=anthropic/claude-haiku-4.5 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J small=true agent=title mode=primary stream
INFO  2026-02-03T16:41:24 +7ms service=bus type=session.updated publishing
INFO  2026-02-03T16:41:24 +9ms service=bus type=session.diff publishing
INFO  2026-02-03T16:41:24 +24ms service=session.processor process
INFO  2026-02-03T16:41:24 +1ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-preview-09-2025 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J small=false agent=build mode=primary stream
INFO  2026-02-03T16:41:24 +0ms service=provider status=started providerID=openrouter getSDK
INFO  2026-02-03T16:41:24 +1ms service=provider status=completed duration=1 providerID=openrouter getSDK
INFO  2026-02-03T16:41:24 +5ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:25 +908ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:25 +12ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:25 +10ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:25 +113ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:25 +130ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:25 +39ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:25 +4ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:25 +15ms service=permission permission=read pattern=/app/input/mixed_content.txt ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"plan_enter","pattern":"*","action":"deny"},{"permission":"plan_exit","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"plan_enter","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:25 +1ms service=permission permission=read pattern=/app/input/mixed_content.txt action={"permission":"read","pattern":"*","action":"allow"} evaluated
INFO  2026-02-03T16:41:25 +20ms service=bus type=message.part.updated publishing

I will first read the content of `mixed_content.txt` to analyze the data.
Then, I will use regular expressions to extract all instances of email addresses, phone numbers, URLs, and dates from the file content.
Finally, I will generate `extracted_data.json` with the extracted data in the specified JSON structure.

INFO  2026-02-03T16:41:25 +4ms service=lsp file=/app/input/mixed_content.txt touching file
INFO  2026-02-03T16:41:25 +1ms service=file.time sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J file=/app/input/mixed_content.txt read
INFO  2026-02-03T16:41:25 +10ms service=bus type=message.part.updated publishing
|  Read     app/input/mixed_content.txt
INFO  2026-02-03T16:41:25 +13ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:25 +2ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:25 +23ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:25 +0ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:25 +0ms service=session.prompt step=1 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J loop
INFO  2026-02-03T16:41:25 +3ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:25 +1ms service=llm providerID=openrouter modelID=anthropic/claude-haiku-4.5 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J small=true agent=title mode=primary stream
INFO  2026-02-03T16:41:25 +1ms service=bus type=session.updated publishing
INFO  2026-02-03T16:41:25 +0ms service=bus type=session.diff publishing
INFO  2026-02-03T16:41:25 +36ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:25 +0ms service=session.prompt status=started resolveTools
INFO  2026-02-03T16:41:25 +1ms service=tool.registry status=started invalid
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=started question
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=started bash
INFO  2026-02-03T16:41:25 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=started read
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=started glob
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=started grep
INFO  2026-02-03T16:41:25 +1ms service=tool.registry status=started edit
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=started write
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=started task
INFO  2026-02-03T16:41:25 +1ms service=tool.registry status=started webfetch
INFO  2026-02-03T16:41:25 +1ms service=tool.registry status=started todowrite
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=started todoread
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=started skill
INFO  2026-02-03T16:41:25 +2ms service=tool.registry status=completed duration=5 invalid
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=completed duration=5 question
INFO  2026-02-03T16:41:25 +1ms service=tool.registry status=completed duration=6 read
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=completed duration=6 glob
INFO  2026-02-03T16:41:25 +1ms service=tool.registry status=completed duration=7 grep
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=completed duration=6 edit
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=completed duration=6 write
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=completed duration=5 webfetch
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=completed duration=4 todowrite
INFO  2026-02-03T16:41:25 +1ms service=tool.registry status=completed duration=5 todoread
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=completed duration=8 bash
INFO  2026-02-03T16:41:25 +2ms service=tool.registry status=completed duration=7 skill
INFO  2026-02-03T16:41:25 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:25 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:25 +0ms service=tool.registry status=completed duration=9 task
INFO  2026-02-03T16:41:25 +6ms service=session.prompt status=completed duration=17 resolveTools
INFO  2026-02-03T16:41:25 +31ms service=session.processor process
INFO  2026-02-03T16:41:25 +2ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-preview-09-2025 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J small=false agent=build mode=primary stream
INFO  2026-02-03T16:41:25 +15ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:26 +768ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:26 +6ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:26 +4ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:26 +199ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:26 +177ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:27 +218ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:27 +261ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:27 +211ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:27 +210ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:27 +242ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:28 +206ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:28 +255ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:28 +4ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:28 +176ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:28 +188ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:28 +201ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:29 +243ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:29 +11ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:29 +18ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:29 +207ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:29 +311ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:29 +151ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:30 +226ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:30 +110ms service=session.summary title=Extract emails, phones, URLs, dates title
INFO  2026-02-03T16:41:30 +13ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:30 +36ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:30 +181ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:30 +258ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:30 +243ms service=bus type=session.updated publishing
INFO  2026-02-03T16:41:30 +27ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:31 +226ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:31 +233ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:31 +213ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:31 +7ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:31 +168ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:32 +179ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:32 +163ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:32 +155ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:32 +177ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:32 +163ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:32 +171ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:33 +178ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:33 +203ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:33 +180ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:33 +149ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:33 +152ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:33 +203ms service=session.summary title=Extract emails, URLs, dates with regex title
INFO  2026-02-03T16:41:33 +5ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:33 +2ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:34 +168ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:34 +147ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:34 +199ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:34 +208ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:34 +140ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:34 +179ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:35 +169ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:35 +228ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:35 +236ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:35 +244ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:35 +129ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:36 +222ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:36 +196ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:36 +201ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:36 +221ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:37 +246ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:37 +149ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:37 +191ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:37 +14ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:37 +36ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:37 +1ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:37 +181ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:40 +2460ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:40 +21ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:40 +14ms service=bus type=message.part.updated publishing

I have read the content of `mixed_content.txt`. Now I will use regular expressions to extract the required data.

### Regular Expressions Used:

1.  **Email Addresses:**
    `[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}`

2.  **Phone Numbers:**
    `(\(\d{3}\)\s*\d{3}-\d{4}|\d{3}-\d{3}-\d{4}|\d{3}\.\d{3}\.\d{4})` (Matches all three specified formats)

3.  **URLs:**
    `(https?:\/\/[a-zA-Z0-9\-\.]+\.[a-zA-Z]{2,}(\/[a-zA-Z0-9\-\._~:\/\?#\[\]@!\$&'\(\)\*\+,;=]*)?)` (Matches http or https followed by domain and optional path/query)

4.  **Dates:**
    `(\d{4}-\d{2}-\d{2}|\d{2}\/\d{2}\/\d{4}|\d{2}-\d{2}-\d{4})` (Matches YYYY-MM-DD, MM/DD/YYYY, and DD-MM-YYYY)

I will use a single `grep` command to find all occurrences of these patterns and then parse the output to construct the JSON structure. However, since the goal is to get all matches in the order they appear and then structure them, a direct multi-pattern grep might be complex to parse. I will use the `grep` tool for each pattern separately, capturing the file line numbers, and then combine the results and sort by line number to maintain the order of appearance.

Given the constraints, I will use a single `bash` command with `grep` to extract all the required data points, each labeled, and then post-process the output to create the JSON.

```bash
cat mixed_content.txt | grep -Eo '([a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,})|(\(\d{3}\)\s*\d{3}-\d{4}|\d{3}-\d{3}-\d{4}|\d{3}\.\d{3}\.\d{4})|(https?:\/\/[a-zA-Z0-9\-\.]+\.[a-zA-Z]{2,}(\/[a-zA-Z0-9\-\._~:\/\?#\[\]@!\$&'\(\)\*\+,;=]*)?)|(\d{4}-\d{2}-\d{2}|\d{2}\/\d{2}\/\d{4}|\d{2}-\d{2}-\d{4})'
```

Wait, the `grep` tool is for searching within files and is preferred for content search. Let me use the `grep` tool with the combined regex pattern. I will use the `rg` (ripgrep) command via the `bash` tool to get the output with line numbers, which is more robust for ordering.

The `rg` command can output JSON, which simplifies post-processing and ensures correct ordering by line number.

I'll use `rg` with the combined regex and the `--json` output format. The regex will be simplified by grouping the patterns for easy extraction.

Combined regex: `(([a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,})|(\(\d{3}\)\s*\d{3}-\d{4}|\d{3}-\d{3}-\d{4}|\d{3}\.\d{3}\.\d{4})|(https?:\/\/[a-zA-Z0-9\-\.]+\.[a-zA-Z]{2,}(\/[a-zA-Z0-9\-\._~:\/\?#\[\]@!\$&'\(\)\*\+,;=]*)?)|(\d{4}-\d{2}-\d{2}|\d{2}\/\d{2}\/\d{4}|\d{2}-\d{2}-\d{4}))`

This is getting complex to manage with a single regex and then categorize the matches. A more robust approach is to run four separate `grep` commands, capture the output, and then use a small script (which I'll write in Python within a single Bash tool call) to process the data, assign categories, and generate the final JSON.

The most efficient and reliable way to ensure correct ordering and categorization is to process the file line by line, extract all matches on that line, categorize them, and build the final structure. This is a perfect job for a self-contained Python script via the `bash` tool.

I will use a Python script to read the file, extract, categorize, and then write the JSON file.

### Extraction Plan:

1.  Define the regular expressions for each pattern.
2.  Read the content of `mixed_content.txt`.
3.  Iterate through the content, find all matches for all patterns, and categorize them. The order of appearance is naturally preserved by iterating through the file and finding matches sequentially within each line.
4.  Write the final JSON object to `extracted_data.json`.

I will use the `bash` tool to execute a Python script that performs the extraction and file creation.

```python
import re
import json

content = """
Customer Support Ticket #45231
================================

Date: 2024-01-15
Contact: john.doe@example.com
Phone: (555) 123-4567

Issue Description:
Customer reported issues accessing their account on 01/15/2024. They tried to login from
https://app.example.com but encountered an error. Previously, they successfully logged in
on 2024-01-10 without any problems.

Follow-up Notes:
- Email sent to john.doe@example.com on 2024-01-16
- Called back at 555-123-4567 on 16-01-2024
- Shared documentation link: https://docs.example.com/troubleshooting
- Alternative contact: jane.smith@company.org, phone: (555) 987-6543

Related Tickets:
- Ticket #45100 from 12/28/2023 - contact: support@example.com
- Ticket #45150 from 01/05/2024 - contact: admin@test.net, phone: 555.111.2222

External Resources:
- KB Article: http://help.example.org/articles/login-issues
- Forum discussion: https://forum.example.com/thread/12345
- Video tutorial: https://video.example.com/watch?v=abc123

Additional contacts for escalation:
1. tech-support@example.com - (555) 444-5555
2. manager@example.com - 555-666-7777
3. emergency@company.org - (555) 888-9999

Timeline:
- 2024-01-15: Issue reported
- 01/16/2024: First response sent
- 17-01-2024: Customer callback
- 2024-01-18: Issue resolved

Customer feedback survey sent to john.doe@example.com
Response received on 01/20/2024 via https://survey.example.com

For more information, visit http://www.example.com or contact info@example.com
Phone support available at 555.222.3333 (Mon-Fri, 9am-5pm)
"""

# 1. Define Regex Patterns
email_re = re.compile(r'[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}')
# Matches: (123) 456-7890, 123-456-7890, 123.456.7890
phone_re = re.compile(r'(\(\d{3}\)\s*\d{3}-\d{4}|\d{3}-\d{3}-\d{4}|\d{3}\.\d{3}\.\d{4})')
# Matches http/https URLs
url_re = re.compile(r'(https?:\/\/[a-zA-Z0-9\-\.]+\.[a-zA-Z]{2,}(\/[a-zA-Z0-9\-\._~:\/\?#\[\]@!\$&\'\(\)\*\+,;=]*)?)')
# Matches: YYYY-MM-DD, MM/DD/YYYY, DD-MM-YYYY
date_re = re.compile(r'(\d{4}-\d{2}-\d{2}|\d{2}\/\d{2}\/\d{4}|\d{2}-\d{2}-\d{4})')

# 2. Initialize results
results = {
    "emails": [],
    "phone_numbers": [],
    "urls": [],
    "dates": []
}

# 3. Read content from file
with open("mixed_content.txt", "r") as f:
    content = f.read()

# 4. Find all matches for each pattern across the entire content
# This ensures that matches are extracted in their order of appearance,
# which is crucial for the requirement "Each array should contain the extracted values in the order they appear in the file."

def extract_and_categorize(text, regex, category):
    # Find all matches and their start positions
    matches = [(m.group(0), m.start()) for m in regex.finditer(text)]
    return [(match, pos, category) for match, pos in matches]

# Collect all matches with their position and category
all_matches = []
all_matches.extend(extract_and_categorize(content, email_re, "emails"))
all_matches.extend(extract_and_categorize(content, phone_re, "phone_numbers"))
all_matches.extend(extract_and_categorize(content, url_re, "urls"))
all_matches.extend(extract_and_categorize(content, date_re, "dates"))

# Sort by position in the text to maintain file order
all_matches.sort(key=lambda x: x[1])

# Populate the final results dictionary in the correct order
for match, pos, category in all_matches:
    # Filter out potential overlaps where a single string might match two different types
    # (e.g., a short URL might match a date regex if poorly written, but the specific regexes are good)
    # The requirement is just to include the match in its corresponding array.

    # Ensure no duplicates from the same source string due to overlapping regex matches.
    # A URL could contain a date, but we extract the whole URL as a URL and the date as a date.
    # Since the regexes are specific, we just append to the correct category.

    # Check if the extracted item is already the last element in its category (to handle single-item overlaps)
    if not results[category] or results[category][-1] != match:
        results[category].append(match)

# 5. Write the final JSON object to extracted_data.json
with open("extracted_data.json", "w") as f:
    json.dump(results, f, indent=2)

print("Extraction and JSON generation complete.")
```

I will execute the Python script using the `bash` tool.I will use a Python script executed via the `bash` tool to read `mixed_content.txt`, apply regular expressions for extraction, and generate the required `extracted_data.json` file. This approach ensures all items are correctly categorized and preserves their order of appearance in the file.

INFO  2026-02-03T16:41:40 +197ms service=permission permission=bash pattern=python3 -c 'import re; import json;

# Define Regex Patterns
email_re = re.compile(r"[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}")
phone_re = re.compile(r"(\(\d{3}\)\s*\d{3}-\d{4}|\d{3}-\d{3}-\d{4}|\d{3}\.\d{3}\.\d{4})")
# A more restrictive URL regex to avoid capturing only a domain when followed by punctuation
url_re = re.compile(r"(https?:\/\/[a-zA-Z0-9\-\.]+\.[a-zA-Z]{2,}(\/[a-zA-Z0-9\-\._~:\/\?#\[\]@!\$&\'\(\)\*\+, ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"plan_enter","pattern":"*","action":"deny"},{"permission":"plan_exit","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"plan_enter","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:40 +1ms service=permission permission=bash pattern=python3 -c 'import re; import json;

# Define Regex Patterns
email_re = re.compile(r"[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}")
phone_re = re.compile(r"(\(\d{3}\)\s*\d{3}-\d{4}|\d{3}-\d{3}-\d{4}|\d{3}\.\d{3}\.\d{4})")
# A more restrictive URL regex to avoid capturing only a domain when followed by punctuation
url_re = re.compile(r"(https?:\/\/[a-zA-Z0-9\-\.]+\.[a-zA-Z]{2,}(\/[a-zA-Z0-9\-\._~:\/\?#\[\]@!\$&\'\(\)\*\+, action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-02-03T16:41:40 +0ms service=permission permission=bash pattern==]*)?)")
date_re = re.compile(r"(\d{4}-\d{2}-\d{2}|\d{2}\/\d{2}\/\d{4}|\d{2}-\d{2}-\d{4}) ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"plan_enter","pattern":"*","action":"deny"},{"permission":"plan_exit","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"plan_enter","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:40 +1ms service=permission permission=bash pattern==]*)?)")
date_re = re.compile(r"(\d{4}-\d{2}-\d{2}|\d{2}\/\d{2}\/\d{4}|\d{2}-\d{2}-\d{4}) action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-02-03T16:41:40 +0ms service=permission permission=bash pattern=\d{4}-\d{2}-\d{2} ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"plan_enter","pattern":"*","action":"deny"},{"permission":"plan_exit","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"plan_enter","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:40 +0ms service=permission permission=bash pattern=\d{4}-\d{2}-\d{2} action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-02-03T16:41:40 +0ms service=permission permission=bash pattern=\d{2}\/\d{2}\/\d{4} ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"plan_enter","pattern":"*","action":"deny"},{"permission":"plan_exit","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"plan_enter","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:40 +1ms service=permission permission=bash pattern=\d{2}\/\d{2}\/\d{4} action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-02-03T16:41:40 +0ms service=permission permission=bash pattern=\d{2}-\d{2}-\d{4} ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"plan_enter","pattern":"*","action":"deny"},{"permission":"plan_exit","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"plan_enter","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:40 +0ms service=permission permission=bash pattern=\d{2}-\d{2}-\d{4} action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-02-03T16:41:40 +0ms service=permission permission=bash pattern=")

# Read content from file
with open("mixed_content.txt", "r") as f:
    content = f.read()

# Initialize results
results = {
    "emails": [],
    "phone_numbers": [],
    "urls": [],
    "dates": []
}

# Function to extract and categorize matches with their position
def extract_and_categorize(text, regex, category):
    matches = []
    for m in regex.finditer(text):
        # Using m.span()[0] for start position
        matches.append((m.group(0), m.span()[0], category))
    return matches

# Collect all matches with their position and category
all_matches = []
all_matches.extend(extract_and_categorize(content, email_re, "emails"))
all_matches.extend(extract_and_categorize(content, phone_re, "phone_numbers"))
all_matches.extend(extract_and_categorize(content, url_re, "urls"))
all_matches.extend(extract_and_categorize(content, date_re, "dates"))

# Sort by position in the text to maintain file order
all_matches.sort(key=lambda x: x[1])

# Populate the final results dictionary
for match, pos, category in all_matches:
    results[category].append(match)

# Write the final JSON object to extracted_data.json
with open("extracted_data.json", "w") as f:
    json.dump(results, f, indent=2)

print("extracted_data.json created.")' ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"plan_enter","pattern":"*","action":"deny"},{"permission":"plan_exit","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"plan_enter","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:40 +2ms service=permission permission=bash pattern=")

# Read content from file
with open("mixed_content.txt", "r") as f:
    content = f.read()

# Initialize results
results = {
    "emails": [],
    "phone_numbers": [],
    "urls": [],
    "dates": []
}

# Function to extract and categorize matches with their position
def extract_and_categorize(text, regex, category):
    matches = []
    for m in regex.finditer(text):
        # Using m.span()[0] for start position
        matches.append((m.group(0), m.span()[0], category))
    return matches

# Collect all matches with their position and category
all_matches = []
all_matches.extend(extract_and_categorize(content, email_re, "emails"))
all_matches.extend(extract_and_categorize(content, phone_re, "phone_numbers"))
all_matches.extend(extract_and_categorize(content, url_re, "urls"))
all_matches.extend(extract_and_categorize(content, date_re, "dates"))

# Sort by position in the text to maintain file order
all_matches.sort(key=lambda x: x[1])

# Populate the final results dictionary
for match, pos, category in all_matches:
    results[category].append(match)

# Write the final JSON object to extracted_data.json
with open("extracted_data.json", "w") as f:
    json.dump(results, f, indent=2)

print("extracted_data.json created.")' action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-02-03T16:41:40 +18ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:40 +19ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:40 +7ms service=bus type=message.part.updated publishing
|  Bash     Extracts data from file and creates JSON.

/usr/bin/bash: -c: line 7: syntax error near unexpected token `)'
/usr/bin/bash: -c: line 7: `url_re = re.compile(r"(https?:\/\/[a-zA-Z0-9\-\.]+\.[a-zA-Z]{2,}(\/[a-zA-Z0-9\-\._~:\/\?#\[\]@!\$&\'\(\)\*\+,;=]*)?)")'

INFO  2026-02-03T16:41:40 +4ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:40 +1ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:40 +62ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:40 +0ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:40 +0ms service=session.prompt step=2 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J loop
INFO  2026-02-03T16:41:40 +52ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:40 +2ms service=bus type=session.updated publishing
INFO  2026-02-03T16:41:40 +2ms service=bus type=session.diff publishing
INFO  2026-02-03T16:41:40 +15ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:40 +1ms service=session.prompt status=started resolveTools
INFO  2026-02-03T16:41:40 +1ms service=tool.registry status=started invalid
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=started question
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=started bash
INFO  2026-02-03T16:41:40 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-02-03T16:41:40 +2ms service=tool.registry status=started read
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=started glob
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=started grep
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=started edit
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=started write
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=started task
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=started webfetch
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=started todowrite
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=started todoread
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=started skill
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=completed duration=2 invalid
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=completed duration=2 question
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=completed duration=0 read
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=completed duration=0 glob
INFO  2026-02-03T16:41:40 +2ms service=tool.registry status=completed duration=2 grep
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=completed duration=2 edit
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=completed duration=2 write
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=completed duration=2 webfetch
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=completed duration=2 todowrite
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=completed duration=2 todoread
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=completed duration=4 bash
INFO  2026-02-03T16:41:40 +1ms service=tool.registry status=completed duration=3 skill
INFO  2026-02-03T16:41:40 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:40 +1ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:40 +0ms service=tool.registry status=completed duration=4 task
INFO  2026-02-03T16:41:40 +5ms service=session.prompt status=completed duration=12 resolveTools
INFO  2026-02-03T16:41:40 +31ms service=session.processor process
INFO  2026-02-03T16:41:40 +1ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-preview-09-2025 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J small=false agent=build mode=primary stream
INFO  2026-02-03T16:41:40 +12ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:41 +817ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:41 +2ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:41 +4ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:41 +222ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:41 +189ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:42 +239ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:42 +257ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:42 +207ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:42 +53ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:42 +145ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:42 +176ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:43 +205ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:43 +164ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:43 +158ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:43 +150ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:43 +183ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:43 +179ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:44 +197ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:44 +171ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:44 +177ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:44 +200ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:44 +203ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:44 +6ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:47 +2330ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:47 +14ms service=permission permission=edit pattern=app/input/extract.py ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"plan_enter","pattern":"*","action":"deny"},{"permission":"plan_exit","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"plan_enter","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:47 +0ms service=permission permission=edit pattern=app/input/extract.py action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-02-03T16:41:47 +1ms service=bus type=file.edited publishing
INFO  2026-02-03T16:41:47 +0ms service=format file=/app/input/extract.py formatting
INFO  2026-02-03T16:41:47 +4ms service=format name=zig ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=uv ext=.py checking
INFO  2026-02-03T16:41:47 +7ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:47 +22ms service=bus type=message.part.updated publishing

My previous attempt to execute the Python script in a single `bash` command failed due to quoting issues with the complex URL regex within the single quotes of the `python3 -c` command.

I will correct this by writing the Python script to a file, executing the file, and then cleaning up, which is a safer approach for complex scripts.

### Corrected Plan:

1.  Write the extraction Python script to a file named `extract.py`.
2.  Execute `extract.py` using `python3`.
3.  Read the generated `extracted_data.json` to confirm the contents.

I will use two parallel `write` calls to create the Python script and the shell command to execute it. Wait, I must use `bash` to execute the Python script.

I will use a single `write` call for the script, and a single `bash` call for execution and cleanup.

### Step 1: Write the Python script `extract.py`
The script will perform the required operations: read the input file, extract data using regexes, categorize by position, and write the JSON file.

```python
import re
import json
import sys

# Define Regex Patterns
email_re = re.compile(r"[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}")
phone_re = re.compile(r"(\(\d{3}\)\s*\d{3}-\d{4}|\d{3}-\d{3}-\d{4}|\d{3}\.\d{3}\.\d{4})")
url_re = re.compile(r"(https?:\/\/[a-zA-Z0-9\-\.]+\.[a-zA-Z]{2,}(\/[a-zA-Z0-9\-\._~:\/\?#\[\]@!\$&\'\(\)\*\+,;=]*)?)")
date_re = re.compile(r"(\d{4}-\d{2}-\d{2}|\d{2}\/\d{2}\/\d{4}|\d{2}-\d{2}-\d{4})")

# Read content from file
try:
    with open("mixed_content.txt", "r") as f:
        content = f.read()
except FileNotFoundError:
    print("Error: mixed_content.txt not found.", file=sys.stderr)
    sys.exit(1)

# Initialize results
results = {
    "emails": [],
    "phone_numbers": [],
    "urls": [],
    "dates": []
}

# Function to extract and categorize matches with their position
def extract_and_categorize(text, regex, category):
    matches = []
    for m in regex.finditer(text):
        # m.start() gives the start position
        matches.append((m.group(0), m.start(), category))
    return matches

# Collect all matches with their position and category
all_matches = []
all_matches.extend(extract_and_categorize(content, email_re, "emails"))
all_matches.extend(extract_and_categorize(content, phone_re, "phone_numbers"))
all_matches.extend(extract_and_categorize(content, url_re, "urls"))
all_matches.extend(extract_and_categorize(content, date_re, "dates"))

# Sort by position in the text to maintain file order
all_matches.sort(key=lambda x: x[1])

# Populate the final results dictionary
for match, pos, category in all_matches:
    results[category].append(match)

# Write the final JSON object to extracted_data.json
with open("extracted_data.json", "w") as f:
    json.dump(results, f, indent=2)

print("Extraction and JSON generation complete.")
```

INFO  2026-02-03T16:41:47 +31ms service=format name=uv ext=.py enabled
INFO  2026-02-03T16:41:47 +2ms service=format name=terraform ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=standardrb ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=shfmt ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=rustfmt ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=ruff ext=.py checking
INFO  2026-02-03T16:41:47 +1ms service=format name=rubocop ext=.py checking
INFO  2026-02-03T16:41:47 +1ms service=format name=air ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=prettier ext=.py checking
INFO  2026-02-03T16:41:47 +1ms service=format name=pint ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=oxfmt ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=ormolu ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=ocamlformat ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=nixfmt ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=mix ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=latexindent ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=ktlint ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=htmlbeautifier ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=gofmt ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=gleam ext=.py checking
INFO  2026-02-03T16:41:47 +5ms service=format name=dart ext=.py checking
INFO  2026-02-03T16:41:47 +1ms service=format name=clang-format ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format name=biome ext=.py checking
INFO  2026-02-03T16:41:47 +0ms service=format command=["uv","format","--","$FILE"] running
INFO  2026-02-03T16:41:48 +731ms service=bus type=file.watcher.updated publishing
INFO  2026-02-03T16:41:48 +5ms service=file.time sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J file=/app/input/extract.py read
INFO  2026-02-03T16:41:48 +2ms service=lsp file=/app/input/extract.py touching file
  ���� Resolving [1/1]   ���� pyright [7/6]   ���� pyright [7/6]   ���� Saving lockfile... INFO  2026-02-03T16:41:49 +1448ms service=lsp serverID=pyright spawned lsp server
INFO  2026-02-03T16:41:49 +1ms service=lsp.client serverID=pyright starting client
INFO  2026-02-03T16:41:49 +20ms service=lsp.client serverID=pyright sending initialize
INFO  2026-02-03T16:41:50 +1387ms service=lsp.client serverID=pyright initialized
INFO  2026-02-03T16:41:50 +2ms service=bus type=lsp.updated publishing
INFO  2026-02-03T16:41:50 +2ms service=lsp.client serverID=pyright path=/app/input/extract.py waiting for diagnostics
INFO  2026-02-03T16:41:50 +1ms service=bus type=lsp.client.diagnostics subscribing
INFO  2026-02-03T16:41:50 +3ms service=lsp.client serverID=pyright path=/app/input/extract.py workspace/didChangeWatchedFiles
INFO  2026-02-03T16:41:50 +5ms service=lsp.client serverID=pyright path=/app/input/extract.py textDocument/didOpen
INFO  2026-02-03T16:41:53 +2995ms service=bus type=lsp.client.diagnostics unsubscribing
INFO  2026-02-03T16:41:53 +58ms service=bus type=message.part.updated publishing
|  Write    app/input/extract.py
INFO  2026-02-03T16:41:53 +3ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:53 +1ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:54 +58ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:54 +1ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:54 +0ms service=session.prompt step=3 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J loop
INFO  2026-02-03T16:41:54 +56ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:54 +3ms service=bus type=session.updated publishing
INFO  2026-02-03T16:41:54 +2ms service=bus type=session.diff publishing
INFO  2026-02-03T16:41:54 +18ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:54 +6ms service=session.prompt status=started resolveTools
INFO  2026-02-03T16:41:54 +9ms service=tool.registry status=started invalid
INFO  2026-02-03T16:41:54 +2ms service=tool.registry status=started question
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=started bash
INFO  2026-02-03T16:41:54 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-02-03T16:41:54 +1ms service=tool.registry status=started read
INFO  2026-02-03T16:41:54 +3ms service=tool.registry status=started glob
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=started grep
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=started edit
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=started write
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=started task
INFO  2026-02-03T16:41:54 +1ms service=tool.registry status=started webfetch
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=started todowrite
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=started todoread
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=started skill
INFO  2026-02-03T16:41:54 +6ms service=tool.registry status=completed duration=13 invalid
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=11 question
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=10 read
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=7 glob
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=7 grep
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=7 edit
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=7 write
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=7 webfetch
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=6 todowrite
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=6 todoread
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=11 bash
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=6 skill
INFO  2026-02-03T16:41:54 +2ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:54 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:54 +0ms service=tool.registry status=completed duration=9 task
INFO  2026-02-03T16:41:54 +28ms service=session.prompt status=completed duration=52 resolveTools
INFO  2026-02-03T16:41:54 +160ms service=session.processor process
INFO  2026-02-03T16:41:54 +0ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-preview-09-2025 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J small=false agent=build mode=primary stream
INFO  2026-02-03T16:41:54 +32ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:54 +591ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:54 +1ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:55 +103ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:55 +21ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:55 +4ms service=permission permission=bash pattern=python3 extract.py ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"plan_enter","pattern":"*","action":"deny"},{"permission":"plan_exit","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"plan_enter","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:55 +6ms service=permission permission=bash pattern=python3 extract.py action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-02-03T16:41:55 +6ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:55 +62ms service=bus type=message.part.updated publishing

`extract.py` has been written. Now I will execute it and then read the generated `extracted_data.json` file.

INFO  2026-02-03T16:41:55 +131ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:55 +3ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:55 +24ms service=bus type=message.part.updated publishing
|  Bash     Execute python script to extract data and generate JSON.

Extraction and JSON generation complete.

INFO  2026-02-03T16:41:55 +6ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:55 +5ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:55 +13ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:55 +0ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:55 +0ms service=session.prompt step=4 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J loop
INFO  2026-02-03T16:41:55 +95ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:55 +3ms service=bus type=session.updated publishing
INFO  2026-02-03T16:41:55 +0ms service=bus type=session.diff publishing
INFO  2026-02-03T16:41:55 +40ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:55 +0ms service=session.prompt status=started resolveTools
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=started invalid
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=started question
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=started bash
INFO  2026-02-03T16:41:55 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-02-03T16:41:55 +1ms service=tool.registry status=started read
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=started glob
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=started grep
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=started edit
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=started write
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=started task
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=started webfetch
INFO  2026-02-03T16:41:55 +3ms service=tool.registry status=started todowrite
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=started todoread
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=started skill
INFO  2026-02-03T16:41:55 +2ms service=tool.registry status=completed duration=6 invalid
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=completed duration=6 question
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=completed duration=5 read
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=completed duration=5 glob
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=completed duration=5 grep
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=completed duration=5 edit
INFO  2026-02-03T16:41:55 +1ms service=tool.registry status=completed duration=6 write
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=completed duration=6 webfetch
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=completed duration=3 todowrite
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=completed duration=3 todoread
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=completed duration=7 bash
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=completed duration=3 skill
INFO  2026-02-03T16:41:55 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:55 +2ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:55 +0ms service=tool.registry status=completed duration=8 task
INFO  2026-02-03T16:41:55 +5ms service=session.prompt status=completed duration=14 resolveTools
INFO  2026-02-03T16:41:55 +9ms service=session.processor process
INFO  2026-02-03T16:41:55 +0ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-preview-09-2025 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J small=false agent=build mode=primary stream
INFO  2026-02-03T16:41:55 +95ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:56 +652ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:56 +1ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:56 +1ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:56 +93ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:56 +6ms service=permission permission=read pattern=/app/input/extracted_data.json ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"plan_enter","pattern":"*","action":"deny"},{"permission":"plan_exit","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"plan_enter","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:56 +0ms service=permission permission=read pattern=/app/input/extracted_data.json action={"permission":"read","pattern":"*","action":"allow"} evaluated
INFO  2026-02-03T16:41:56 +0ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:56 +2ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:56 +28ms service=bus type=message.part.updated publishing

The extraction script ran successfully, creating `extracted_data.json`. I will now read the file to confirm its content and structure.

INFO  2026-02-03T16:41:56 +1ms service=lsp file=/app/input/extracted_data.json touching file
INFO  2026-02-03T16:41:56 +0ms service=file.time sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J file=/app/input/extracted_data.json read
INFO  2026-02-03T16:41:56 +1ms service=bus type=message.part.updated publishing
|  Read     app/input/extracted_data.json
INFO  2026-02-03T16:41:56 +3ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:56 +1ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:56 +26ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:56 +0ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:56 +0ms service=session.prompt step=5 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J loop
INFO  2026-02-03T16:41:56 +27ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:56 +1ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:56 +0ms service=session.prompt status=started resolveTools
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=started invalid
INFO  2026-02-03T16:41:56 +2ms service=tool.registry status=started question
INFO  2026-02-03T16:41:56 +1ms service=tool.registry status=started bash
INFO  2026-02-03T16:41:56 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=started read
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=started glob
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=started grep
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=started edit
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=started write
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=started task
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=started webfetch
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=started todowrite
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=started todoread
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=started skill
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=completed duration=3 invalid
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=completed duration=1 question
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=completed duration=0 read
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=completed duration=0 glob
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=completed duration=0 grep
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=completed duration=0 edit
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=completed duration=0 write
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=completed duration=0 webfetch
INFO  2026-02-03T16:41:56 +1ms service=tool.registry status=completed duration=0 todowrite
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=completed duration=1 todoread
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=completed duration=1 bash
INFO  2026-02-03T16:41:56 +7ms service=tool.registry status=completed duration=1 skill
INFO  2026-02-03T16:41:56 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:56 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"plan_enter","action":"deny","pattern":"*"},{"permission":"plan_exit","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"plan_enter","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-02-03T16:41:56 +0ms service=tool.registry status=completed duration=8 task
INFO  2026-02-03T16:41:56 +4ms service=session.prompt status=completed duration=15 resolveTools
INFO  2026-02-03T16:41:56 +1ms service=bus type=session.updated publishing
INFO  2026-02-03T16:41:56 +0ms service=bus type=session.diff publishing
INFO  2026-02-03T16:41:56 +4ms service=session.processor process
INFO  2026-02-03T16:41:56 +0ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-preview-09-2025 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J small=false agent=build mode=primary stream
INFO  2026-02-03T16:41:56 +21ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:56 +18ms service=lsp.client serverID=pyright path=/app/input/extract.py count=0 textDocument/publishDiagnostics
INFO  2026-02-03T16:41:56 +4ms service=bus type=lsp.client.diagnostics publishing
INFO  2026-02-03T16:41:57 +568ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:57 +3ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:57 +0ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:57 +14ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:57 +26ms service=bus type=message.part.updated publishing

The file `extracted_data.json` has been successfully created with all the required data extracted and categorized in the order of appearance.

INFO  2026-02-03T16:41:57 +4ms service=bus type=message.part.updated publishing
INFO  2026-02-03T16:41:57 +2ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:57 +6ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:57 +3ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:57 +0ms service=session.prompt step=6 sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J loop
INFO  2026-02-03T16:41:57 +39ms service=bus type=message.updated publishing
INFO  2026-02-03T16:41:57 +1ms service=session.prompt sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J exiting loop
INFO  2026-02-03T16:41:57 +1ms service=session.compaction pruning
INFO  2026-02-03T16:41:57 +0ms service=bus type=session.updated publishing
INFO  2026-02-03T16:41:57 +0ms service=bus type=session.diff publishing
INFO  2026-02-03T16:41:57 +4ms service=session.prompt sessionID=ses_3db9eaeb1ffet4d7anYUy7IO7J cancel
INFO  2026-02-03T16:41:57 +0ms service=bus type=session.status publishing
INFO  2026-02-03T16:41:57 +1ms service=bus type=session.idle publishing
INFO  2026-02-03T16:41:57 +2ms service=default directory=/app/input disposing instance
INFO  2026-02-03T16:41:57 +1ms service=state key=/app/input waiting for state disposal to complete
INFO  2026-02-03T16:41:57 +1ms service=lsp.client serverID=pyright shutting down
INFO  2026-02-03T16:41:57 +1ms service=lsp.client serverID=pyright shutdown
INFO  2026-02-03T16:41:57 +1ms service=state key=/app/input state disposal completed
--- Initial command finished (exit code: 0) ---
--- no_shell=true, exiting container without starting shell ---
Command execution complete. Container has exited.
Session has been cleaned up.