/home/llmeval/.local/share/uv/tools/cubbi/lib/python3.12/site-packages/click/core.py:1213: UserWarning: The parameter -m is used more than once. Remove its duplicate as parameters should be unique.
  parser = self.make_parser(ctx)
/home/llmeval/.local/share/uv/tools/cubbi/lib/python3.12/site-packages/click/core.py:1206: UserWarning: The parameter -m is used more than once. Remove its duplicate as parameters should be unique.
  self.parse_args(ctx, args)
Using UID: 1000, GID: 1000
Forwarding environment variable OPENROUTER_API_KEY to container
Mounting local directory /home/llmeval/llmeval/runs/run_20260123_150058/task6_config_merger/openrouter-qwen-qwen3-coder/workspace to /app
No project_name provided - skipping configuration directory setup.
Session created successfully!
Session ID: b64b7a76
Image: opencode
Executing command and waiting for completion...
Container will exit after command completes.
Command logs:
Initializing opencode v1.0.0
Setting up user 'cubbi' with UID: 1000, GID: 1000
Setting up standard directories
Created directory: /app
Created directory: /cubbi-config
Created directory: /cubbi-config/home
Creating /home/cubbi as symlink to /cubbi-config/home
Created directory: /cubbi-config/home/.local
Copied /root/.local/bin to user directory
Running opencode-specific initialization
Added litellm custom provider with 151 models to OpenCode configuration
Added openrouter standard provider with 345 models to OpenCode configuration
Set default model to openrouter/qwen/qwen3-coder
Updated OpenCode configuration at /home/cubbi/.config/opencode/config.json with 2 providers
No MCP servers to integrate
--- Executing initial command ---
Executing user command:
    if [ -f install.sh ]; then bash install.sh; fi;
    echo "--- TASK BEGIN ---"; cat task.md; echo "--- TASK END ---";
    cd input && opencode run --print-logs < ../task.md

Executing as cubbi: sh -c
    if [ -f install.sh ]; then bash install.sh; fi;
    echo "--- TASK BEGIN ---"; cat task.md; echo "--- TASK END ---";
    cd input && opencode run --print-logs < ../task.md

��� Created base.json and override.json
--- TASK BEGIN ---
# Configuration File Merger

Merge two JSON configuration files (`base.json` and `override.json`) into `merged.json`.

## Merge Rules

1. **Objects**: Deep merge recursively
   - Keep all keys from base that aren't in override
   - Override values replace base values for matching keys
   - Nested objects merge recursively at all levels

2. **Arrays**: Complete replacement (not concatenation)
   - Override arrays completely replace base arrays
   - Array order should be preserved exactly as in override

3. **Primitives**: Override wins
   - Strings, numbers, booleans from override replace base
   - Type changes are allowed (e.g., number ��� string)

4. **Null handling**: `null` in override REMOVES the key entirely
   - Works recursively in nested objects
   - Example: `{"a": {"b": null}}` removes key `b` from nested object `a`
   - Top-level null values remove top-level keys

## Example

Base: `{"server": {"port": 3000, "host": "localhost"}, "remove": "me"}`
Override: `{"server": {"port": 8080}, "remove": null}`
Result: `{"server": {"port": 8080, "host": "localhost"}}`

Note: `server.host` preserved (deep merge), `remove` deleted (null), `server.port` overridden

PS: You are currently working in an automated system and cannot ask any question or have back and forth with an user.
--- TASK END ---
INFO  2026-01-23T15:59:03 +1081ms service=default version=1.1.17 args=["run","--print-logs"] opencode
INFO  2026-01-23T15:59:03 +12ms service=default directory=/app/input creating instance
INFO  2026-01-23T15:59:03 +9ms service=project directory=/app/input fromDirectory
INFO  2026-01-23T15:59:03 +26ms service=storage index=0 running migration
ERROR 2026-01-23T15:59:03 +21ms service=storage index=0 failed to run migration
INFO  2026-01-23T15:59:03 +5ms service=storage index=1 running migration
INFO  2026-01-23T15:59:03 +31ms service=default directory=/app/input bootstrapping
INFO  2026-01-23T15:59:03 +32ms service=config path=/home/cubbi/.config/opencode/config.json loading
INFO  2026-01-23T15:59:03 +60ms service=config path=/home/cubbi/.config/opencode/opencode.json loading
INFO  2026-01-23T15:59:03 +1ms service=config path=/home/cubbi/.config/opencode/opencode.jsonc loading
INFO  2026-01-23T15:59:03 +12ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","add","@opencode-ai/plugin@1.1.17","--exact"] cwd=/home/cubbi/.config/opencode running
INFO  2026-01-23T15:59:04 +800ms service=bun code=0 stdout=bun add v1.3.5 (1e86cebd)

installed @opencode-ai/plugin@1.1.17

3 packages installed [759.00ms]
 stderr=Resolving dependencies
Resolved, downloaded and extracted [12]
Saved lockfile
 done
INFO  2026-01-23T15:59:04 +1ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","install"] cwd=/home/cubbi/.config/opencode running
INFO  2026-01-23T15:59:04 +33ms service=bun code=0 stdout=bun install v1.3.5 (1e86cebd)

Checked 3 installs across 4 packages (no changes) [7.00ms]
 stderr= done
INFO  2026-01-23T15:59:04 +16ms service=plugin name=CodexAuthPlugin loading internal plugin
INFO  2026-01-23T15:59:04 +4ms service=plugin path=opencode-copilot-auth@0.0.12 loading plugin
INFO  2026-01-23T15:59:04 +3ms service=bun pkg=opencode-copilot-auth version=0.0.12 installing package using Bun's default registry resolution
INFO  2026-01-23T15:59:04 +0ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","add","--force","--exact","--cwd","/home/cubbi/.cache/opencode","opencode-copilot-auth@0.0.12"] cwd=/home/cubbi/.cache/opencode running
INFO  2026-01-23T15:59:04 +127ms service=bun code=0 stdout=bun add v1.3.5 (1e86cebd)

installed opencode-copilot-auth@0.0.12

1 package installed [108.00ms]
 stderr=Resolving dependencies
Resolved, downloaded and extracted [4]
Saved lockfile
 done
INFO  2026-01-23T15:59:04 +7ms service=plugin path=opencode-anthropic-auth@0.0.8 loading plugin
INFO  2026-01-23T15:59:04 +2ms service=bun pkg=opencode-anthropic-auth version=0.0.8 installing package using Bun's default registry resolution
INFO  2026-01-23T15:59:04 +0ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","add","--force","--exact","--cwd","/home/cubbi/.cache/opencode","opencode-anthropic-auth@0.0.8"] cwd=/home/cubbi/.cache/opencode running
INFO  2026-01-23T15:59:05 +697ms service=bun code=0 stdout=bun add v1.3.5 (1e86cebd)

+ opencode-copilot-auth@0.0.12

installed opencode-anthropic-auth@0.0.8

14 packages installed [674.00ms]
 stderr=Resolving dependencies
Resolved, downloaded and extracted [50]
Saved lockfile
 done
INFO  2026-01-23T15:59:05 +78ms service=bus type=* subscribing
INFO  2026-01-23T15:59:05 +0ms service=bus type=session.updated subscribing
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INFO  2026-01-23T15:59:05 +0ms service=format init
INFO  2026-01-23T15:59:05 +0ms service=bus type=file.edited subscribing
INFO  2026-01-23T15:59:05 +3ms service=lsp serverIds=deno, typescript, vue, eslint, oxlint, biome, gopls, ruby-lsp, pyright, elixir-ls, zls, csharp, fsharp, sourcekit-lsp, rust, clangd, svelte, astro, jdtls, kotlin-ls, yaml-ls, lua-ls, php intelephense, prisma, dart, ocaml-lsp, bash, terraform, texlab, dockerfile, gleam, clojure-lsp, nixd, tinymist, haskell-language-server enabled LSP servers
INFO  2026-01-23T15:59:05 +10ms service=bus type=command.executed subscribing
INFO  2026-01-23T15:59:05 +60ms service=server method=POST path=/session request
INFO  2026-01-23T15:59:05 +0ms service=server status=started method=POST path=/session request
INFO  2026-01-23T15:59:05 +5ms service=session id=ses_4146b5be8ffeCXCsqun3fp07za version=1.1.17 projectID=global directory=/app/input title=New session - 2026-01-23T15:59:05.751Z time={"created":1769183945751,"updated":1769183945751} created
INFO  2026-01-23T15:59:05 +22ms service=bus type=session.created publishing
INFO  2026-01-23T15:59:05 +0ms service=bus type=session.updated publishing
INFO  2026-01-23T15:59:05 +23ms service=server status=completed duration=50 method=POST path=/session request
INFO  2026-01-23T15:59:05 +1ms service=server method=GET path=/config request
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INFO  2026-01-23T15:59:05 +0ms service=server event connected
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INFO  2026-01-23T15:59:05 +41ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:05 +9ms service=provider status=started state
INFO  2026-01-23T15:59:05 +9ms service=models.dev file={} refreshing
INFO  2026-01-23T15:59:06 +109ms service=provider init
INFO  2026-01-23T15:59:06 +23ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:06 +4ms service=bus type=session.updated publishing
INFO  2026-01-23T15:59:06 +23ms service=bus type=session.status publishing
INFO  2026-01-23T15:59:06 +3ms service=session.prompt step=0 sessionID=ses_4146b5be8ffeCXCsqun3fp07za loop
INFO  2026-01-23T15:59:06 +44ms service=provider providerID=openrouter found
INFO  2026-01-23T15:59:06 +5ms service=provider providerID=opencode found
INFO  2026-01-23T15:59:06 +1ms service=provider providerID=litellm found
INFO  2026-01-23T15:59:06 +1ms service=provider status=completed duration=222 state
INFO  2026-01-23T15:59:06 +32ms service=llm providerID=openrouter modelID=anthropic/claude-haiku-4.5 sessionID=ses_4146b5be8ffeCXCsqun3fp07za small=true agent=title stream
INFO  2026-01-23T15:59:06 +6ms service=provider status=started providerID=openrouter getSDK
INFO  2026-01-23T15:59:06 +1ms service=provider providerID=openrouter pkg=@ai-sdk/openai-compatible using bundled provider
INFO  2026-01-23T15:59:06 +1ms service=provider status=completed duration=2 providerID=openrouter getSDK
INFO  2026-01-23T15:59:06 +5ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:06 +5ms service=session.prompt status=started resolveTools
INFO  2026-01-23T15:59:06 +20ms service=tool.registry status=started invalid
INFO  2026-01-23T15:59:06 +1ms service=tool.registry status=started question
INFO  2026-01-23T15:59:06 +1ms service=tool.registry status=started bash
INFO  2026-01-23T15:59:06 +1ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-23T15:59:06 +1ms service=tool.registry status=started read
INFO  2026-01-23T15:59:06 +0ms service=tool.registry status=started glob
INFO  2026-01-23T15:59:06 +0ms service=tool.registry status=started grep
INFO  2026-01-23T15:59:06 +0ms service=tool.registry status=started edit
INFO  2026-01-23T15:59:06 +0ms service=tool.registry status=started write
INFO  2026-01-23T15:59:06 +0ms service=tool.registry status=started task
INFO  2026-01-23T15:59:06 +1ms service=tool.registry status=started webfetch
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INFO  2026-01-23T15:59:06 +0ms service=tool.registry status=started skill
INFO  2026-01-23T15:59:06 +1ms service=tool.registry status=completed duration=7 invalid
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INFO  2026-01-23T15:59:06 +0ms service=tool.registry status=completed duration=6 edit
INFO  2026-01-23T15:59:06 +0ms service=tool.registry status=completed duration=6 write
INFO  2026-01-23T15:59:06 +0ms service=tool.registry status=completed duration=5 webfetch
INFO  2026-01-23T15:59:06 +2ms service=tool.registry status=completed duration=7 todowrite
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INFO  2026-01-23T15:59:06 +0ms service=tool.registry status=completed duration=10 bash
INFO  2026-01-23T15:59:06 +1ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:06 +4ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:06 +1ms service=tool.registry status=completed duration=14 task
INFO  2026-01-23T15:59:06 +71ms service=tool.registry status=completed duration=83 skill
INFO  2026-01-23T15:59:06 +14ms service=session.prompt status=completed duration=123 resolveTools
INFO  2026-01-23T15:59:06 +27ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:06 +7ms service=llm providerID=openrouter modelID=anthropic/claude-haiku-4.5 sessionID=ses_4146b5be8ffeCXCsqun3fp07za small=true agent=title stream
INFO  2026-01-23T15:59:06 +4ms service=bus type=session.updated publishing
INFO  2026-01-23T15:59:06 +6ms service=bus type=session.diff publishing
INFO  2026-01-23T15:59:06 +26ms service=session.processor process
INFO  2026-01-23T15:59:06 +0ms service=llm providerID=openrouter modelID=qwen/qwen3-coder sessionID=ses_4146b5be8ffeCXCsqun3fp07za small=false agent=build stream
INFO  2026-01-23T15:59:06 +0ms service=provider status=started providerID=openrouter getSDK
INFO  2026-01-23T15:59:06 +0ms service=provider status=completed duration=0 providerID=openrouter getSDK
INFO  2026-01-23T15:59:06 +10ms service=bus type=session.status publishing
INFO  2026-01-23T15:59:08 +1994ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T15:59:08 +160ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T15:59:09 +307ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:09 +102ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:10 +585ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:10 +3ms service=permission permission=glob pattern=*.json ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:10 +0ms service=permission permission=glob pattern=*.json action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-23T15:59:10 +66ms service=bus type=message.part.updated publishing
|  Glob     app/input
INFO  2026-01-23T15:59:10 +22ms service=bus type=message.part.updated publishing

I'll create a script to merge two JSON configuration files according to the specified rules. Let me first check if the required files exist and then implement the merger.

INFO  2026-01-23T15:59:10 +10ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:10 +6ms service=bus type=message.updated publishing
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INFO  2026-01-23T15:59:10 +1ms service=bus type=session.status publishing
INFO  2026-01-23T15:59:10 +0ms service=session.prompt step=1 sessionID=ses_4146b5be8ffeCXCsqun3fp07za loop
INFO  2026-01-23T15:59:10 +35ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:10 +1ms service=llm providerID=openrouter modelID=anthropic/claude-haiku-4.5 sessionID=ses_4146b5be8ffeCXCsqun3fp07za small=true agent=title stream
INFO  2026-01-23T15:59:10 +0ms service=bus type=session.updated publishing
INFO  2026-01-23T15:59:10 +0ms service=bus type=session.diff publishing
INFO  2026-01-23T15:59:10 +32ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:10 +0ms service=session.prompt status=started resolveTools
INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=started invalid
INFO  2026-01-23T15:59:10 +1ms service=tool.registry status=started question
INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=started bash
INFO  2026-01-23T15:59:10 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-23T15:59:10 +4ms service=tool.registry status=started read
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INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=started edit
INFO  2026-01-23T15:59:10 +1ms service=tool.registry status=started write
INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=started task
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INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=started skill
INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=completed duration=7 invalid
INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=completed duration=6 question
INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=completed duration=3 read
INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=completed duration=2 glob
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INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=completed duration=2 edit
INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=completed duration=1 write
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INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=completed duration=0 todowrite
INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=completed duration=0 todoread
INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=completed duration=6 bash
INFO  2026-01-23T15:59:10 +1ms service=tool.registry status=completed duration=1 skill
INFO  2026-01-23T15:59:10 +1ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:10 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:10 +0ms service=tool.registry status=completed duration=3 task
INFO  2026-01-23T15:59:10 +2ms service=session.prompt status=completed duration=11 resolveTools
INFO  2026-01-23T15:59:10 +27ms service=session.processor process
INFO  2026-01-23T15:59:10 +0ms service=llm providerID=openrouter modelID=qwen/qwen3-coder sessionID=ses_4146b5be8ffeCXCsqun3fp07za small=false agent=build stream
INFO  2026-01-23T15:59:10 +22ms service=bus type=session.status publishing
INFO  2026-01-23T15:59:13 +3171ms service=bus type=session.updated publishing
INFO  2026-01-23T15:59:14 +670ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +8ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +176ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +64ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +83ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +27ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +9ms service=session.summary title=Deep merge JSON configs title
INFO  2026-01-23T15:59:14 +3ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:14 +63ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +82ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +116ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:14 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:15 +295ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:15 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:15 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:15 +479ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:15 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:15 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:15 +9ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:16 +1152ms service=session.summary title=Merge JSON config files title
INFO  2026-01-23T15:59:16 +4ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:16 +11ms service=permission permission=read pattern=/app/input/base.json ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:16 +0ms service=permission permission=read pattern=/app/input/base.json action={"permission":"read","pattern":"*","action":"allow"} evaluated
INFO  2026-01-23T15:59:16 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:16 +26ms service=lsp file=/app/input/base.json touching file
INFO  2026-01-23T15:59:16 +0ms service=file.time sessionID=ses_4146b5be8ffeCXCsqun3fp07za file=/app/input/base.json read
INFO  2026-01-23T15:59:16 +4ms service=bus type=message.part.updated publishing
|  Read     app/input/base.json
INFO  2026-01-23T15:59:16 +63ms service=bus type=message.part.updated publishing

Let me read the content of both JSON files to understand their structure before implementing the merge logic.

INFO  2026-01-23T15:59:16 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:16 +1ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:16 +4ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:16 +0ms service=bus type=session.status publishing
INFO  2026-01-23T15:59:16 +0ms service=session.prompt step=2 sessionID=ses_4146b5be8ffeCXCsqun3fp07za loop
INFO  2026-01-23T15:59:16 +7ms service=bus type=session.updated publishing
INFO  2026-01-23T15:59:16 +0ms service=bus type=session.diff publishing
INFO  2026-01-23T15:59:16 +1ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:16 +1ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:16 +1ms service=session.prompt status=started resolveTools
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=started invalid
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=started question
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=started bash
INFO  2026-01-23T15:59:16 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-23T15:59:16 +1ms service=tool.registry status=started read
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=started glob
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=started grep
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=started edit
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=started write
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=started task
INFO  2026-01-23T15:59:16 +1ms service=tool.registry status=started webfetch
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=started todowrite
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=started todoread
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=started skill
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=2 invalid
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=2 question
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=1 read
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=1 glob
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=1 grep
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=1 edit
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=1 write
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=0 webfetch
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=0 todowrite
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=0 todoread
INFO  2026-01-23T15:59:16 +1ms service=tool.registry status=completed duration=3 bash
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=1 skill
INFO  2026-01-23T15:59:16 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:16 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:16 +0ms service=tool.registry status=completed duration=2 task
INFO  2026-01-23T15:59:16 +4ms service=session.prompt status=completed duration=7 resolveTools
INFO  2026-01-23T15:59:17 +8ms service=session.processor process
INFO  2026-01-23T15:59:17 +1ms service=llm providerID=openrouter modelID=qwen/qwen3-coder sessionID=ses_4146b5be8ffeCXCsqun3fp07za small=false agent=build stream
INFO  2026-01-23T15:59:17 +5ms service=bus type=session.status publishing
INFO  2026-01-23T15:59:17 +901ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:17 +56ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:18 +248ms service=permission permission=read pattern=/app/input/override.json ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:18 +1ms service=permission permission=read pattern=/app/input/override.json action={"permission":"read","pattern":"*","action":"allow"} evaluated
INFO  2026-01-23T15:59:18 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:18 +21ms service=lsp file=/app/input/override.json touching file
INFO  2026-01-23T15:59:18 +2ms service=file.time sessionID=ses_4146b5be8ffeCXCsqun3fp07za file=/app/input/override.json read
INFO  2026-01-23T15:59:18 +2ms service=bus type=message.part.updated publishing
|  Read     app/input/override.json
INFO  2026-01-23T15:59:18 +65ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:18 +9ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:18 +14ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:18 +0ms service=bus type=session.status publishing
INFO  2026-01-23T15:59:18 +0ms service=session.prompt step=3 sessionID=ses_4146b5be8ffeCXCsqun3fp07za loop
INFO  2026-01-23T15:59:18 +36ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:18 +2ms service=bus type=session.updated publishing
INFO  2026-01-23T15:59:18 +3ms service=bus type=session.diff publishing
INFO  2026-01-23T15:59:18 +14ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:18 +0ms service=session.prompt status=started resolveTools
INFO  2026-01-23T15:59:18 +1ms service=tool.registry status=started invalid
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=started question
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=started bash
INFO  2026-01-23T15:59:18 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-23T15:59:18 +2ms service=tool.registry status=started read
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=started glob
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=started grep
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=started edit
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=started write
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=started task
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=started webfetch
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=started todowrite
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=started todoread
INFO  2026-01-23T15:59:18 +1ms service=tool.registry status=started skill
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=completed duration=3 invalid
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=completed duration=3 question
INFO  2026-01-23T15:59:18 +1ms service=tool.registry status=completed duration=2 read
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=completed duration=2 glob
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=completed duration=2 grep
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=completed duration=2 edit
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=completed duration=2 write
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=completed duration=2 webfetch
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=completed duration=2 todowrite
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=completed duration=2 todoread
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=completed duration=4 bash
INFO  2026-01-23T15:59:18 +1ms service=tool.registry status=completed duration=2 skill
INFO  2026-01-23T15:59:18 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:18 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:18 +0ms service=tool.registry status=completed duration=3 task
INFO  2026-01-23T15:59:18 +4ms service=session.prompt status=completed duration=10 resolveTools
INFO  2026-01-23T15:59:18 +46ms service=session.processor process
INFO  2026-01-23T15:59:18 +1ms service=llm providerID=openrouter modelID=qwen/qwen3-coder sessionID=ses_4146b5be8ffeCXCsqun3fp07za small=false agent=build stream
INFO  2026-01-23T15:59:18 +25ms service=bus type=session.status publishing
INFO  2026-01-23T15:59:22 +4518ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:22 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +146ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +181ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +40ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +73ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +81ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +209ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +21ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +98ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:23 +70ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:24 +131ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:24 +326ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:47 +22628ms service=permission permission=edit pattern=app/input/merge_configs.py ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:47 +0ms service=permission permission=edit pattern=app/input/merge_configs.py action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-23T15:59:47 +4ms service=bus type=file.edited publishing
INFO  2026-01-23T15:59:47 +0ms service=format file=/app/input/merge_configs.py formatting
INFO  2026-01-23T15:59:47 +10ms service=format name=zig ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=uv format ext=.py checking
INFO  2026-01-23T15:59:47 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:47 +17ms service=bus type=message.part.updated publishing

Now I'll create a Python script to merge these JSON files according to the specified rules:

INFO  2026-01-23T15:59:47 +21ms service=format name=uv format ext=.py enabled
INFO  2026-01-23T15:59:47 +0ms service=format name=terraform ext=.py checking
INFO  2026-01-23T15:59:47 +1ms service=format name=standardrb ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=shfmt ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=rustfmt ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=ruff ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=rubocop ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=air ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=prettier ext=.py checking
INFO  2026-01-23T15:59:47 +1ms service=format name=oxfmt ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=ocamlformat ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=nixfmt ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=mix ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=latexindent ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=ktlint ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=htmlbeautifier ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=gofmt ext=.py checking
INFO  2026-01-23T15:59:47 +1ms service=format name=gleam ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=dart ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=clang-format ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=cargofmt ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format name=biome ext=.py checking
INFO  2026-01-23T15:59:47 +0ms service=format command=["uv","format","--","$FILE"] running
INFO  2026-01-23T15:59:47 +577ms service=file.time sessionID=ses_4146b5be8ffeCXCsqun3fp07za file=/app/input/merge_configs.py read
INFO  2026-01-23T15:59:47 +1ms service=lsp file=/app/input/merge_configs.py touching file
  ���� Resolving [1/1]   ���� pyright [7/6]   ���� pyright [7/6]   ���� Saving lockfile... INFO  2026-01-23T15:59:49 +1444ms service=lsp serverID=pyright spawned lsp server
INFO  2026-01-23T15:59:49 +1ms service=lsp.client serverID=pyright starting client
INFO  2026-01-23T15:59:49 +12ms service=lsp.client serverID=pyright sending initialize
INFO  2026-01-23T15:59:50 +1195ms service=lsp.client serverID=pyright initialized
INFO  2026-01-23T15:59:50 +0ms service=bus type=lsp.updated publishing
INFO  2026-01-23T15:59:50 +1ms service=lsp.client serverID=pyright path=/app/input/merge_configs.py waiting for diagnostics
INFO  2026-01-23T15:59:50 +5ms service=bus type=lsp.client.diagnostics subscribing
INFO  2026-01-23T15:59:50 +2ms service=lsp.client serverID=pyright path=/app/input/merge_configs.py workspace/didChangeWatchedFiles
INFO  2026-01-23T15:59:50 +1ms service=lsp.client serverID=pyright path=/app/input/merge_configs.py textDocument/didOpen
INFO  2026-01-23T15:59:53 +3004ms service=bus type=lsp.client.diagnostics unsubscribing
INFO  2026-01-23T15:59:53 +11ms service=bus type=message.part.updated publishing
|  Write    app/input/merge_configs.py
INFO  2026-01-23T15:59:53 +10ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:53 +3ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:53 +9ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:53 +1ms service=bus type=session.status publishing
INFO  2026-01-23T15:59:53 +4ms service=session.prompt step=4 sessionID=ses_4146b5be8ffeCXCsqun3fp07za loop
INFO  2026-01-23T15:59:53 +209ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:53 +21ms service=bus type=session.updated publishing
INFO  2026-01-23T15:59:53 +6ms service=bus type=session.diff publishing
INFO  2026-01-23T15:59:53 +24ms service=bus type=message.updated publishing
INFO  2026-01-23T15:59:53 +1ms service=session.prompt status=started resolveTools
INFO  2026-01-23T15:59:53 +9ms service=tool.registry status=started invalid
INFO  2026-01-23T15:59:53 +1ms service=tool.registry status=started question
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=started bash
INFO  2026-01-23T15:59:53 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=started read
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=started glob
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=started grep
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=started edit
INFO  2026-01-23T15:59:53 +1ms service=tool.registry status=started write
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=started task
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=started webfetch
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=started todowrite
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=started todoread
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=started skill
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=2 invalid
INFO  2026-01-23T15:59:53 +1ms service=tool.registry status=completed duration=1 question
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=2 read
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=2 glob
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=2 grep
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=2 edit
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=1 write
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=1 webfetch
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=1 todowrite
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=1 todoread
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=2 bash
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=1 skill
INFO  2026-01-23T15:59:53 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:53 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T15:59:53 +0ms service=tool.registry status=completed duration=1 task
INFO  2026-01-23T15:59:53 +10ms service=session.prompt status=completed duration=22 resolveTools
INFO  2026-01-23T15:59:53 +10ms service=session.processor process
INFO  2026-01-23T15:59:53 +3ms service=llm providerID=openrouter modelID=qwen/qwen3-coder sessionID=ses_4146b5be8ffeCXCsqun3fp07za small=false agent=build stream
INFO  2026-01-23T15:59:53 +19ms service=bus type=session.status publishing
INFO  2026-01-23T15:59:54 +1022ms service=lsp.client serverID=pyright path=/app/input/merge_configs.py count=0 textDocument/publishDiagnostics
INFO  2026-01-23T15:59:54 +1ms service=bus type=lsp.client.diagnostics publishing
INFO  2026-01-23T15:59:57 +3013ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:57 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:57 +11ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:57 +40ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:57 +59ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:57 +40ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:58 +178ms service=bus type=message.part.updated publishing
INFO  2026-01-23T15:59:58 +96ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:00 +2854ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:01 +108ms service=permission permission=bash pattern=python merge_configs.py base.json override.json merged.json ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T16:00:01 +4ms service=permission permission=bash pattern=python merge_configs.py base.json override.json merged.json action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-23T16:00:01 +11ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:01 +29ms service=bus type=message.part.updated publishing

Now let's run the script to merge the configuration files:

INFO  2026-01-23T16:00:01 +351ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:01 +28ms service=bus type=message.part.updated publishing
|  Bash     Merge the JSON configuration files

Successfully merged base.json and override.json into merged.json

INFO  2026-01-23T16:00:01 +12ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:01 +2ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:01 +17ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:01 +0ms service=bus type=session.status publishing
INFO  2026-01-23T16:00:01 +0ms service=session.prompt step=5 sessionID=ses_4146b5be8ffeCXCsqun3fp07za loop
INFO  2026-01-23T16:00:01 +87ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:01 +3ms service=session.prompt status=started resolveTools
INFO  2026-01-23T16:00:01 +1ms service=tool.registry status=started invalid
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=started question
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=started bash
INFO  2026-01-23T16:00:01 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-23T16:00:01 +1ms service=tool.registry status=started read
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=started glob
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=started grep
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=started edit
INFO  2026-01-23T16:00:01 +1ms service=tool.registry status=started write
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=started task
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=started webfetch
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=started todowrite
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=started todoread
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=started skill
INFO  2026-01-23T16:00:01 +1ms service=tool.registry status=completed duration=3 invalid
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=completed duration=3 question
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=completed duration=2 read
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=completed duration=2 glob
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=completed duration=2 grep
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=completed duration=2 edit
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=completed duration=2 write
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=completed duration=1 webfetch
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=completed duration=1 todowrite
INFO  2026-01-23T16:00:01 +0ms service=tool.registry status=completed duration=1 todoread
INFO  2026-01-23T16:00:01 +1ms service=tool.registry status=completed duration=4 bash
INFO  2026-01-23T16:00:01 +4ms service=tool.registry status=completed duration=6 skill
INFO  2026-01-23T16:00:01 +1ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T16:00:01 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T16:00:01 +1ms service=tool.registry status=completed duration=8 task
INFO  2026-01-23T16:00:01 +4ms service=session.prompt status=completed duration=15 resolveTools
INFO  2026-01-23T16:00:01 +5ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:01 +3ms service=bus type=session.updated publishing
INFO  2026-01-23T16:00:01 +3ms service=bus type=session.diff publishing
INFO  2026-01-23T16:00:01 +6ms service=session.processor process
INFO  2026-01-23T16:00:01 +1ms service=llm providerID=openrouter modelID=qwen/qwen3-coder sessionID=ses_4146b5be8ffeCXCsqun3fp07za small=false agent=build stream
INFO  2026-01-23T16:00:01 +8ms service=bus type=session.status publishing
INFO  2026-01-23T16:00:02 +547ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +29ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +35ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +26ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +239ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +102ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +3ms service=permission permission=read pattern=/app/input/merged.json ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T16:00:02 +1ms service=permission permission=read pattern=/app/input/merged.json action={"permission":"read","pattern":"*","action":"allow"} evaluated
INFO  2026-01-23T16:00:02 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +29ms service=lsp file=/app/input/merged.json touching file
INFO  2026-01-23T16:00:02 +7ms service=file.time sessionID=ses_4146b5be8ffeCXCsqun3fp07za file=/app/input/merged.json read
INFO  2026-01-23T16:00:02 +27ms service=bus type=message.part.updated publishing

Let's check the merged configuration file to verify that it was created correctly according to the merge rules:

INFO  2026-01-23T16:00:02 +15ms service=bus type=message.part.updated publishing
|  Read     app/input/merged.json
INFO  2026-01-23T16:00:02 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:02 +7ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:02 +40ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:02 +1ms service=bus type=session.status publishing
INFO  2026-01-23T16:00:02 +0ms service=session.prompt step=6 sessionID=ses_4146b5be8ffeCXCsqun3fp07za loop
INFO  2026-01-23T16:00:02 +49ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:02 +4ms service=bus type=session.updated publishing
INFO  2026-01-23T16:00:02 +5ms service=bus type=session.diff publishing
INFO  2026-01-23T16:00:02 +13ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:02 +0ms service=session.prompt status=started resolveTools
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=started invalid
INFO  2026-01-23T16:00:02 +1ms service=tool.registry status=started question
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=started bash
INFO  2026-01-23T16:00:02 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-23T16:00:02 +4ms service=tool.registry status=started read
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=started glob
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=started grep
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=started edit
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=started write
INFO  2026-01-23T16:00:02 +1ms service=tool.registry status=started task
INFO  2026-01-23T16:00:02 +1ms service=tool.registry status=started webfetch
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=started todowrite
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=started todoread
INFO  2026-01-23T16:00:02 +1ms service=tool.registry status=started skill
INFO  2026-01-23T16:00:02 +1ms service=tool.registry status=completed duration=9 invalid
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=completed duration=8 question
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=completed duration=4 read
INFO  2026-01-23T16:00:02 +1ms service=tool.registry status=completed duration=5 glob
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=completed duration=5 grep
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=completed duration=5 edit
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=completed duration=5 write
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=completed duration=3 webfetch
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=completed duration=3 todowrite
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=completed duration=3 todoread
INFO  2026-01-23T16:00:02 +0ms service=tool.registry status=completed duration=9 bash
INFO  2026-01-23T16:00:02 +1ms service=tool.registry status=completed duration=3 skill
INFO  2026-01-23T16:00:02 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T16:00:02 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T16:00:02 +1ms service=tool.registry status=completed duration=6 task
INFO  2026-01-23T16:00:02 +5ms service=session.prompt status=completed duration=17 resolveTools
INFO  2026-01-23T16:00:02 +58ms service=session.processor process
INFO  2026-01-23T16:00:02 +1ms service=llm providerID=openrouter modelID=qwen/qwen3-coder sessionID=ses_4146b5be8ffeCXCsqun3fp07za small=false agent=build stream
INFO  2026-01-23T16:00:02 +24ms service=bus type=session.status publishing
INFO  2026-01-23T16:00:06 +3576ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:06 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:06 +316ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:06 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:06 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:06 +75ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:06 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +123ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +13ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +42ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +400ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +117ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +44ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +185ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +28ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:07 +31ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +505ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +9ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +10ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +8ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +60ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +57ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +104ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +88ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +83ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +51ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:08 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +241ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +50ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +129ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +43ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +211ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +60ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +142ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:09 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:10 +116ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:10 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:10 +25ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:10 +76ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:10 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:10 +41ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:10 +822ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:10 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:10 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:10 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:10 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +9ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +82ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:11 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +899ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +10ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +367ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +422ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +31ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:12 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +165ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +104ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +39ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +49ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +70ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +159ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +201ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:13 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +528ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +9ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +66ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +458ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +14ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +11ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +116ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:14 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +58ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +77ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +12ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +94ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +25ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +50ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +172ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +193ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +45ms service=bus type=message.part.updated publishing

The configuration files have been successfully merged according to the specified rules:

1. **Objects merged recursively**:
   - `server.port` updated from 3000 to 8080
   - `server.host` preserved as "localhost"
   - `server.ssl` settings merged properly
   - `database.pool` settings merged correctly

2. **Arrays replaced completely**:
   - `features` array replaced with the new array from override.json

3. **Primitives overridden**:
   - `version` updated from "1.0.0" to "2.0.0"
   - `new_setting` added from override.json

4. **Null handling**:
   - `debug` key removed due to null value in override.json
   - `remove_this` key removed due to null value in override.json

The merged configuration is now available in `merged.json`.

INFO  2026-01-23T16:00:15 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:15 +1ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:15 +17ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:15 +1ms service=bus type=session.status publishing
INFO  2026-01-23T16:00:15 +0ms service=session.prompt step=7 sessionID=ses_4146b5be8ffeCXCsqun3fp07za loop
INFO  2026-01-23T16:00:15 +62ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:15 +4ms service=bus type=session.updated publishing
INFO  2026-01-23T16:00:15 +2ms service=bus type=session.diff publishing
INFO  2026-01-23T16:00:15 +20ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:15 +1ms service=session.prompt status=started resolveTools
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=started invalid
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=started question
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=started bash
INFO  2026-01-23T16:00:15 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-23T16:00:15 +2ms service=tool.registry status=started read
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=started glob
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=started grep
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=started edit
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=started write
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=started task
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=started webfetch
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=started todowrite
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=started todoread
INFO  2026-01-23T16:00:15 +1ms service=tool.registry status=started skill
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=completed duration=3 invalid
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=completed duration=3 question
INFO  2026-01-23T16:00:15 +1ms service=tool.registry status=completed duration=2 read
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=completed duration=2 glob
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=completed duration=2 grep
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=completed duration=2 edit
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=completed duration=2 write
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=completed duration=2 webfetch
INFO  2026-01-23T16:00:15 +1ms service=tool.registry status=completed duration=3 todowrite
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=completed duration=3 todoread
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=completed duration=5 bash
INFO  2026-01-23T16:00:15 +0ms service=tool.registry status=completed duration=2 skill
INFO  2026-01-23T16:00:15 +1ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T16:00:15 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-23T16:00:15 +2ms service=tool.registry status=completed duration=6 task
INFO  2026-01-23T16:00:15 +4ms service=session.prompt status=completed duration=12 resolveTools
INFO  2026-01-23T16:00:15 +25ms service=session.processor process
INFO  2026-01-23T16:00:15 +7ms service=llm providerID=openrouter modelID=qwen/qwen3-coder sessionID=ses_4146b5be8ffeCXCsqun3fp07za small=false agent=build stream
INFO  2026-01-23T16:00:15 +22ms service=bus type=session.status publishing
INFO  2026-01-23T16:00:17 +1800ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +11ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +20ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +21ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +19ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +29ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +22ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +16ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +12ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +48ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:17 +2ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:18 +45ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:18 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:18 +25ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:18 +1ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:18 +1ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:18 +34ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:18 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:18 +45ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:18 +4ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:18 +7ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:18 +2ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:18 +15ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:18 +16ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:19 +462ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:19 +479ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:20 +468ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:22 +39ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:22 +1ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:22 +1ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:22 +29ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:22 +1ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:22 +32ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:22 +0ms service=bus type=message.part.updated publishing
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INFO  2026-01-23T16:00:22 +14ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +29ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +30ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +9ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +10ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +13ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +15ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +19ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +21ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +19ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +20ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +6ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +13ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +18ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +21ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +15ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +15ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +13ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +13ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +19ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +54ms service=bus type=message.part.updated publishing

Let me verify that the merge was done correctly according to all the specified rules:

1. Objects are deep merged recursively: ���
   - server settings show proper merging (port overridden, host preserved)
   - database settings show proper merging (pool settings updated)

2. Arrays are completely replaced (not concatenated): ���
   - features array was replaced with the override value

3. Primitives: Override wins: ���
   - version updated from "1.0.0" to "2.0.0"

4. Null handling: null in override removes the key: ���
   - debug key removed (was true in base, null in override)
   - remove_this key removed (was "should be deleted" in base, null in override)

The merge was performed correctly according to all requirements. The merged.json file contains the properly merged configuration.

INFO  2026-01-23T16:00:23 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-23T16:00:23 +3ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:23 +25ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:23 +0ms service=bus type=session.status publishing
INFO  2026-01-23T16:00:23 +0ms service=session.prompt step=8 sessionID=ses_4146b5be8ffeCXCsqun3fp07za loop
INFO  2026-01-23T16:00:23 +56ms service=bus type=message.updated publishing
INFO  2026-01-23T16:00:23 +4ms service=bus type=session.updated publishing
INFO  2026-01-23T16:00:23 +4ms service=bus type=session.diff publishing
INFO  2026-01-23T16:00:23 +26ms service=session.prompt sessionID=ses_4146b5be8ffeCXCsqun3fp07za exiting loop
INFO  2026-01-23T16:00:23 +4ms service=session.compaction pruning
INFO  2026-01-23T16:00:23 +3ms service=session.prompt sessionID=ses_4146b5be8ffeCXCsqun3fp07za cancel
INFO  2026-01-23T16:00:23 +0ms service=bus type=session.status publishing
INFO  2026-01-23T16:00:23 +0ms service=bus type=session.idle publishing
INFO  2026-01-23T16:00:23 +1ms service=default directory=/app/input disposing instance
INFO  2026-01-23T16:00:23 +1ms service=state key=/app/input waiting for state disposal to complete
INFO  2026-01-23T16:00:23 +1ms service=lsp.client serverID=pyright shutting down
INFO  2026-01-23T16:00:23 +1ms service=lsp.client serverID=pyright shutdown
INFO  2026-01-23T16:00:23 +1ms service=state key=/app/input state disposal completed
--- Initial command finished (exit code: 0) ---
--- no_shell=true, exiting container without starting shell ---
Command execution complete. Container has exited.
Session has been cleaned up.