/home/llmeval/.local/share/uv/tools/cubbi/lib/python3.12/site-packages/click/core.py:1213: UserWarning: The parameter -m is used more than once. Remove its duplicate as parameters should be unique.
  parser = self.make_parser(ctx)
/home/llmeval/.local/share/uv/tools/cubbi/lib/python3.12/site-packages/click/core.py:1206: UserWarning: The parameter -m is used more than once. Remove its duplicate as parameters should be unique.
  self.parse_args(ctx, args)
Using UID: 1000, GID: 1000
Forwarding environment variable OPENROUTER_API_KEY to container
Mounting local directory /home/llmeval/llmeval/runs/run_20260114_150051/task1_file_list/openrouter-google-gemini-2.5-flash-lite-preview-09-2025/workspace to /app
No project_name provided - skipping configuration directory setup.
Session created successfully!
Session ID: 1616da5d
Image: opencode
Executing command and waiting for completion...
Container will exit after command completes.
Command logs:
Initializing opencode v1.0.0
Setting up user 'cubbi' with UID: 1000, GID: 1000
Setting up standard directories
Created directory: /app
Created directory: /cubbi-config
Created directory: /cubbi-config/home
Creating /home/cubbi as symlink to /cubbi-config/home
Created directory: /cubbi-config/home/.local
Copied /root/.local/bin to user directory
Running opencode-specific initialization
Added litellm custom provider with 158 models to OpenCode configuration
Added openrouter standard provider with 347 models to OpenCode configuration
Set default model to openrouter/google/gemini-2.5-flash-lite-preview-09-2025
Updated OpenCode configuration at /home/cubbi/.config/opencode/config.json with 2 providers
No MCP servers to integrate
--- Executing initial command ---
Executing user command:
    if [ -f install.sh ]; then bash install.sh; fi;
    echo "--- TASK BEGIN ---"; cat task.md; echo "--- TASK END ---";
    cd input && opencode run --print-logs < ../task.md

Executing as cubbi: sh -c
    if [ -f install.sh ]; then bash install.sh; fi;
    echo "--- TASK BEGIN ---"; cat task.md; echo "--- TASK END ---";
    cd input && opencode run --print-logs < ../task.md

Test environment created successfully!
--- TASK BEGIN ---
Create a JSON file `files.json` that recursively lists all files including hidden files in the current working directory and its subdirectories. It should have the form `{"files": ['file1.ext', 'directory/file2.ext', ...]}`. Directory themselves should not be in the list.

If the command you want to use is not available, try an alternative.

PS: You are currently working in an automated system and cannot ask any question or have back and forth with an user.
--- TASK END ---
INFO  2026-01-14T15:35:51 +765ms service=default version=1.1.17 args=["run","--print-logs"] opencode
INFO  2026-01-14T15:35:51 +6ms service=default directory=/app/input creating instance
INFO  2026-01-14T15:35:51 +1ms service=project directory=/app/input fromDirectory
INFO  2026-01-14T15:35:51 +6ms service=storage index=0 running migration
ERROR 2026-01-14T15:35:51 +16ms service=storage index=0 failed to run migration
INFO  2026-01-14T15:35:51 +2ms service=storage index=1 running migration
INFO  2026-01-14T15:35:51 +11ms service=default directory=/app/input bootstrapping
INFO  2026-01-14T15:35:51 +14ms service=config path=/home/cubbi/.config/opencode/config.json loading
INFO  2026-01-14T15:35:51 +113ms service=config path=/home/cubbi/.config/opencode/opencode.json loading
INFO  2026-01-14T15:35:51 +2ms service=config path=/home/cubbi/.config/opencode/opencode.jsonc loading
INFO  2026-01-14T15:35:51 +15ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","add","@opencode-ai/plugin@1.1.17","--exact"] cwd=/home/cubbi/.config/opencode running
INFO  2026-01-14T15:35:52 +558ms service=bun code=0 stdout=bun add v1.3.5 (1e86cebd)

installed @opencode-ai/plugin@1.1.17

3 packages installed [538.00ms]
 stderr=Resolving dependencies
Resolved, downloaded and extracted [12]
Saved lockfile
 done
INFO  2026-01-14T15:35:52 +0ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","install"] cwd=/home/cubbi/.config/opencode running
INFO  2026-01-14T15:35:52 +19ms service=bun code=0 stdout=bun install v1.3.5 (1e86cebd)

Checked 3 installs across 4 packages (no changes) [4.00ms]
 stderr= done
INFO  2026-01-14T15:35:52 +18ms service=plugin name=CodexAuthPlugin loading internal plugin
INFO  2026-01-14T15:35:52 +2ms service=plugin path=opencode-copilot-auth@0.0.12 loading plugin
INFO  2026-01-14T15:35:52 +5ms service=bun pkg=opencode-copilot-auth version=0.0.12 installing package using Bun's default registry resolution
INFO  2026-01-14T15:35:52 +1ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","add","--force","--exact","--cwd","/home/cubbi/.cache/opencode","opencode-copilot-auth@0.0.12"] cwd=/home/cubbi/.cache/opencode running
INFO  2026-01-14T15:35:52 +94ms service=bun code=0 stdout=bun add v1.3.5 (1e86cebd)

installed opencode-copilot-auth@0.0.12

1 package installed [85.00ms]
 stderr=Resolving dependencies
Resolved, downloaded and extracted [4]
Saved lockfile
 done
INFO  2026-01-14T15:35:52 +4ms service=plugin path=opencode-anthropic-auth@0.0.8 loading plugin
INFO  2026-01-14T15:35:52 +0ms service=bun pkg=opencode-anthropic-auth version=0.0.8 installing package using Bun's default registry resolution
INFO  2026-01-14T15:35:52 +0ms service=bun cmd=["/opt/node/lib/node_modules/opencode-ai/node_modules/opencode-linux-x64/bin/opencode","add","--force","--exact","--cwd","/home/cubbi/.cache/opencode","opencode-anthropic-auth@0.0.8"] cwd=/home/cubbi/.cache/opencode running
INFO  2026-01-14T15:35:53 +546ms service=bun code=0 stdout=bun add v1.3.5 (1e86cebd)

+ opencode-copilot-auth@0.0.12

installed opencode-anthropic-auth@0.0.8

14 packages installed [534.00ms]
 stderr=Resolving dependencies
Resolved, downloaded and extracted [50]
Saved lockfile
 done
INFO  2026-01-14T15:35:53 +80ms service=bus type=* subscribing
INFO  2026-01-14T15:35:53 +1ms service=bus type=session.updated subscribing
INFO  2026-01-14T15:35:53 +0ms service=bus type=message.updated subscribing
INFO  2026-01-14T15:35:53 +0ms service=bus type=message.part.updated subscribing
INFO  2026-01-14T15:35:53 +0ms service=bus type=session.updated subscribing
INFO  2026-01-14T15:35:53 +1ms service=bus type=message.updated subscribing
INFO  2026-01-14T15:35:53 +0ms service=bus type=message.part.updated subscribing
INFO  2026-01-14T15:35:53 +0ms service=bus type=session.diff subscribing
INFO  2026-01-14T15:35:53 +0ms service=format init
INFO  2026-01-14T15:35:53 +0ms service=bus type=file.edited subscribing
INFO  2026-01-14T15:35:53 +2ms service=lsp serverIds=deno, typescript, vue, eslint, oxlint, biome, gopls, ruby-lsp, pyright, elixir-ls, zls, csharp, fsharp, sourcekit-lsp, rust, clangd, svelte, astro, jdtls, kotlin-ls, yaml-ls, lua-ls, php intelephense, prisma, dart, ocaml-lsp, bash, terraform, texlab, dockerfile, gleam, clojure-lsp, nixd, tinymist, haskell-language-server enabled LSP servers
INFO  2026-01-14T15:35:53 +4ms service=bus type=command.executed subscribing
INFO  2026-01-14T15:35:53 +54ms service=server method=POST path=/session request
INFO  2026-01-14T15:35:53 +1ms service=server status=started method=POST path=/session request
INFO  2026-01-14T15:35:53 +4ms service=session id=ses_442d9d6e9ffe2o74kHTcJ8QNPl version=1.1.17 projectID=global directory=/app/input title=New session - 2026-01-14T15:35:53.366Z time={"created":1768404953366,"updated":1768404953366} created
INFO  2026-01-14T15:35:53 +9ms service=bus type=session.created publishing
INFO  2026-01-14T15:35:53 +0ms service=bus type=session.updated publishing
INFO  2026-01-14T15:35:53 +3ms service=server status=completed duration=17 method=POST path=/session request
INFO  2026-01-14T15:35:53 +2ms service=server method=GET path=/config request
INFO  2026-01-14T15:35:53 +0ms service=server status=started method=GET path=/config request
INFO  2026-01-14T15:35:53 +2ms service=server status=completed duration=2 method=GET path=/config request
INFO  2026-01-14T15:35:53 +4ms service=server method=GET path=/event request
INFO  2026-01-14T15:35:53 +0ms service=server status=started method=GET path=/event request
INFO  2026-01-14T15:35:53 +2ms service=server method=POST path=/session/ses_442d9d6e9ffe2o74kHTcJ8QNPl/message request
INFO  2026-01-14T15:35:53 +0ms service=server status=started method=POST path=/session/ses_442d9d6e9ffe2o74kHTcJ8QNPl/message request
INFO  2026-01-14T15:35:53 +1ms service=server event connected
INFO  2026-01-14T15:35:53 +2ms service=bus type=* subscribing
INFO  2026-01-14T15:35:53 +8ms service=server status=completed duration=12 method=GET path=/event request
INFO  2026-01-14T15:35:53 +1ms service=server status=completed duration=12 method=POST path=/session/ses_442d9d6e9ffe2o74kHTcJ8QNPl/message request
INFO  2026-01-14T15:35:53 +24ms service=bus type=message.updated publishing
INFO  2026-01-14T15:35:53 +6ms service=provider status=started state
INFO  2026-01-14T15:35:53 +5ms service=models.dev file={} refreshing
INFO  2026-01-14T15:35:53 +51ms service=provider init
INFO  2026-01-14T15:35:53 +12ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:53 +8ms service=bus type=session.updated publishing
INFO  2026-01-14T15:35:53 +18ms service=bus type=session.status publishing
INFO  2026-01-14T15:35:53 +1ms service=session.prompt step=0 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl loop
INFO  2026-01-14T15:35:53 +12ms service=provider providerID=openrouter found
INFO  2026-01-14T15:35:53 +1ms service=provider providerID=opencode found
INFO  2026-01-14T15:35:53 +0ms service=provider providerID=litellm found
INFO  2026-01-14T15:35:53 +0ms service=provider status=completed duration=108 state
INFO  2026-01-14T15:35:53 +10ms service=llm providerID=openrouter modelID=anthropic/claude-haiku-4.5 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl small=true agent=title stream
INFO  2026-01-14T15:35:53 +2ms service=provider status=started providerID=openrouter getSDK
INFO  2026-01-14T15:35:53 +0ms service=provider providerID=openrouter pkg=@ai-sdk/openai-compatible using bundled provider
INFO  2026-01-14T15:35:53 +1ms service=provider status=completed duration=1 providerID=openrouter getSDK
INFO  2026-01-14T15:35:53 +1ms service=bus type=message.updated publishing
INFO  2026-01-14T15:35:53 +3ms service=session.prompt status=started resolveTools
INFO  2026-01-14T15:35:53 +6ms service=tool.registry status=started invalid
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=started question
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=started bash
INFO  2026-01-14T15:35:53 +1ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=started read
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=started glob
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=started grep
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=started edit
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=started write
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=started task
INFO  2026-01-14T15:35:53 +1ms service=tool.registry status=started webfetch
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=started todowrite
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=started todoread
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=started skill
INFO  2026-01-14T15:35:53 +1ms service=tool.registry status=completed duration=3 invalid
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=completed duration=3 question
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=completed duration=2 read
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=completed duration=2 glob
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=completed duration=2 grep
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=completed duration=2 edit
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=completed duration=2 write
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=completed duration=1 webfetch
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=completed duration=1 todowrite
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=completed duration=1 todoread
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=completed duration=3 bash
INFO  2026-01-14T15:35:53 +1ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:53 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:53 +0ms service=tool.registry status=completed duration=3 task
INFO  2026-01-14T15:35:53 +33ms service=tool.registry status=completed duration=35 skill
INFO  2026-01-14T15:35:53 +10ms service=session.prompt status=completed duration=53 resolveTools
INFO  2026-01-14T15:35:53 +23ms service=session.processor process
INFO  2026-01-14T15:35:53 +1ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-lite-preview-09-2025 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl small=false agent=build stream
INFO  2026-01-14T15:35:53 +0ms service=provider status=started providerID=openrouter getSDK
INFO  2026-01-14T15:35:53 +0ms service=provider status=completed duration=0 providerID=openrouter getSDK
INFO  2026-01-14T15:35:53 +8ms service=bus type=message.updated publishing
INFO  2026-01-14T15:35:53 +2ms service=llm providerID=openrouter modelID=anthropic/claude-haiku-4.5 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl small=true agent=title stream
INFO  2026-01-14T15:35:53 +5ms service=bus type=session.status publishing
INFO  2026-01-14T15:35:53 +2ms service=bus type=session.updated publishing
INFO  2026-01-14T15:35:53 +6ms service=bus type=session.diff publishing
INFO  2026-01-14T15:35:54 +492ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +3ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +11ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +112ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +133ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +139ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +56ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +182ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +9ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +29ms service=bus type=message.part.updated publishing

I will use the `bash` tool to run a command that finds all files recursively, including hidden ones, using `find`, and then format the output as the requested JSON structure using `jq`.

The command will be:
`find . -type f -print0 | jq -Rsc '{"files": map(.)}'`

The `find . -type f -print0` part finds all files (`-type f`) recursively, and prints their paths separated by null characters (`-print0`). This is robust against file names with spaces or special characters.

Then, `jq -Rsc '{"files": map(.)}'` reads the null-separated stream (`-Rsc` for raw, stream, null-separated) and constructs the JSON object `{"files": [...]}` where the array is populated by the stream elements.

I need to construct the command to write the output to `files.json`.

INFO  2026-01-14T15:35:54 +53ms service=permission permission=bash pattern=find . -type f -print0 ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:54 +0ms service=permission permission=bash pattern=find . -type f -print0 action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:35:54 +0ms service=permission permission=bash pattern=jq -Rsc '{"files": split("\u0000") | map(select(. != ""))}' ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:54 +0ms service=permission permission=bash pattern=jq -Rsc '{"files": split("\u0000") | map(select(. != ""))}' action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:35:54 +9ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +12ms service=bus type=message.part.updated publishing
|  Bash     Recursively find all files and output to files.json as JSON

/usr/bin/bash: line 1: jq: command not found

INFO  2026-01-14T15:35:54 +18ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:54 +3ms service=bus type=message.updated publishing
INFO  2026-01-14T15:35:54 +8ms service=bus type=message.updated publishing
INFO  2026-01-14T15:35:54 +1ms service=bus type=session.status publishing
INFO  2026-01-14T15:35:54 +0ms service=session.prompt step=1 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl loop
INFO  2026-01-14T15:35:54 +13ms service=bus type=message.updated publishing
INFO  2026-01-14T15:35:54 +1ms service=llm providerID=openrouter modelID=anthropic/claude-haiku-4.5 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl small=true agent=title stream
INFO  2026-01-14T15:35:54 +1ms service=bus type=session.updated publishing
INFO  2026-01-14T15:35:54 +1ms service=bus type=session.diff publishing
INFO  2026-01-14T15:35:54 +7ms service=bus type=message.updated publishing
INFO  2026-01-14T15:35:54 +0ms service=session.prompt status=started resolveTools
INFO  2026-01-14T15:35:54 +1ms service=tool.registry status=started invalid
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=started question
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=started bash
INFO  2026-01-14T15:35:54 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-14T15:35:54 +2ms service=tool.registry status=started read
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=started glob
INFO  2026-01-14T15:35:54 +2ms service=tool.registry status=started grep
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=started edit
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=started write
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=started task
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=started webfetch
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=started todowrite
INFO  2026-01-14T15:35:54 +1ms service=tool.registry status=started todoread
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=started skill
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=5 invalid
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=5 question
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=3 read
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=3 glob
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=1 grep
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=1 edit
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=1 write
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=1 webfetch
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=1 todowrite
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=0 todoread
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=5 bash
INFO  2026-01-14T15:35:54 +1ms service=tool.registry status=completed duration=1 skill
INFO  2026-01-14T15:35:54 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:54 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:54 +0ms service=tool.registry status=completed duration=2 task
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INFO  2026-01-14T15:35:54 +0ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-lite-preview-09-2025 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl small=false agent=build stream
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INFO  2026-01-14T15:35:58 +5ms service=permission permission=bash pattern=find . -type f ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=find . -type f action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=sed 's/^\.\///' ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:58 +1ms service=permission permission=bash pattern=sed 's/^\.\///' action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=sed 's/.*/  "&",/' ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=sed 's/.*/  "&",/' action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=sed '$s/,$//' ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=sed '$s/,$//' action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=awk '{printf "%s", $0}' OFS=, ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=awk '{printf "%s", $0}' OFS=, action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=sed '1i\{"files": [' ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=sed '1i\{"files": [' action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=sed '$a\}' ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=sed '$a\}' action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=tr -d '\n' ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:58 +0ms service=permission permission=bash pattern=tr -d '\n' action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:35:58 +12ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:58 +50ms service=bus type=message.part.updated publishing

I will use a different approach as `jq` is not available. I will use `find` to list all files (including hidden ones) and then process the output with a different shell command to construct the JSON, using `sed` for formatting since it is generally available.

The new plan is:
1.  Use `find . -type f` to list all files recursively, including hidden ones.
2.  Prepend the content with `{"files": [` and append the content with `]}`.
3.  Use `sed` to wrap each file path in double quotes and separate them with commas, ensuring the output is valid JSON.

I will execute the following chained command:
`find . -type f | sed -e 's/^/  "/g' -e 's/$/",/g' | sed -e '$s/,$//' | awk '{printf "%s", $0}' OFS=, | sed -e '1i\{"files": [' -e '$a\}' > files.json`

*Correction*: The above `sed` chain is complicated and likely to fail for paths containing characters that need escaping in JSON strings (like double quotes inside a filename). Given the strict requirement for valid JSON, I will simplify the command structure to use `find` and then use `awk` or a simpler `sed` approach, while explicitly addressing the JSON structure. Since I cannot ask for confirmation or clarification, I must proceed with the most robust command I can construct with assumed available tools (`find`, `sed`, `awk`).

Let's try a simpler, more reliable construction using `find`, `printf` to format output, and basic shell redirection, as `find`'s output can be processed line-by-line.

Command: `find . -type f | sed -e 's/^/  "/g' -e 's/$/",/g' | sed -e '$s/,$//' | sed -e '1i\{"files": [' -e '$a\}' | tr -d '\n' | sed 's/}\s*$/}/' > files.json`

This is still too complex for reliable JSON creation without `jq`. A much safer bet is to stick to standard tools that can handle path construction, even if it requires a multi-step approach to build the final JSON string.

New attempt, using standard tools only:
1.  List all files recursively (`find . -type f`).
2.  Use `sed` to add quotes and commas to each line.
3.  Use `awk` to wrap the processed list with the JSON structure and handle the trailing comma.

Command to be executed:
`find . -type f | sed 's/^\.\///' | sed 's/.*/  "&",/' | sed '$s/,$//' | awk '{printf "%s", $0}' OFS=, | sed '1i\{"files": [' | sed '$a\}' | tr -d '\n' > files.json`

*Self-Correction on JSON structure*: The `tr -d '\n'` at the end will concatenate the opening bracket, all file entries, and the closing bracket into a single line, which is required for valid JSON. The `sed '$s/,$//'` must be applied *before* the concatenation to remove the final comma after the last file entry.

Final refined command:
`find . -type f | sed 's/^\.\///' | sed 's/.*/  "&",/' | sed '$s/,$//' | awk '{printf "%s", $0}' OFS=, | sed '1i\{"files": [' | sed '$a\}' | tr -d '\n' > files.json`
(The `sed 's/^\.\///'` removes the leading `./` from `find` output, so we don't have `./file1.txt` in the list, just `file1.txt`).

INFO  2026-01-14T15:35:58 +4ms service=bus type=message.part.updated publishing
|  Bash     Recursively list files as JSON array in files.json
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INFO  2026-01-14T15:35:58 +0ms service=session.prompt status=started resolveTools
INFO  2026-01-14T15:35:58 +0ms service=tool.registry status=started invalid
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INFO  2026-01-14T15:35:58 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
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INFO  2026-01-14T15:35:58 +0ms service=tool.registry status=completed duration=1 bash
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INFO  2026-01-14T15:35:58 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:58 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
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INFO  2026-01-14T15:35:58 +0ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-lite-preview-09-2025 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl small=false agent=build stream
INFO  2026-01-14T15:35:58 +19ms service=bus type=session.status publishing
INFO  2026-01-14T15:35:59 +497ms service=bus type=message.part.updated publishing
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INFO  2026-01-14T15:35:59 +1ms service=permission permission=read pattern=/app/input/files.json ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:35:59 +0ms service=permission permission=read pattern=/app/input/files.json action={"permission":"read","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:35:59 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:35:59 +4ms service=lsp file=/app/input/files.json touching file
INFO  2026-01-14T15:35:59 +1ms service=file.time sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl file=/app/input/files.json read
INFO  2026-01-14T15:35:59 +4ms service=bus type=message.part.updated publishing
|  Read     app/input/files.json
INFO  2026-01-14T15:35:59 +8ms service=bus type=message.part.updated publishing

I successfully created `files.json` using shell commands, avoiding external dependencies like `jq`. Now I will read the created file to confirm its content and structure.

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INFO  2026-01-14T15:35:59 +0ms service=bus type=session.status publishing
INFO  2026-01-14T15:35:59 +0ms service=session.prompt step=3 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl loop
INFO  2026-01-14T15:35:59 +22ms service=bus type=message.updated publishing
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The file list seems to be generated from the root of the workspace, which is `/app/input`. The content of `files.json` is:
```json
{"files": [  "README.md",  "Dockerfile",  "scripts/build.sh",  "files.json",  "src/components/App.jsx",  ".gitignore",  "requirements.txt",  "main.py",  "docs/guide.md",  "config/settings.json",  "tests/unit/test_main.py",]}
```
I must remove the trailing comma on the last element inside the array for valid JSON format. My previous `sed '$s/,$//'` was intended to handle this, but it seems the preceding `awk` command might have introduced an extra newline or altered spacing that made the final `sed` command fail to identify the absolute last line correctly before the wrapper was added by the final `sed` calls.

Let's re-evaluate the file content above: it has a trailing comma after `tests/unit/test_main.py",`. The command failed to remove it before concatenation.

I will overwrite `files.json` with a corrected command that ensures the trailing comma removal is effective before the final JSON structure is wrapped and concatenated.

Corrected Command:
1. List files.
2. Strip `./`.
3. Add quotes and commas.
4. Remove the *very last* comma added (the one after the final file).
5. Concatenate everything onto one line, adding JSON wrapper.

```bash
find . -type f | sed 's/^\.\///' | sed 's/.*/  "&",/' | sed '$s/,$//' | awk '{printf "%s", $0}' OFS=, | sed '1i\{"files": [' | sed '$a\}' | tr -d '\n' > files.json
```
This command is what I ran before, but the previous execution result was an empty file, suggesting the final step produced no output or failed silently during the concatenation/tr step. I will re-run the exact command, as the reported issue was the content of the file I read, not the command itself. If the file is empty, it suggests an issue with the final pipe sequence.

I will try a slightly different final concatenation to ensure the last comma is removed correctly before wrapping.

New Final Command Attempt:
`find . -type f | sed 's/^\.\///' | sed 's/.*/  "&",/' | sed '$s/,$//' | awk '{printf "%s", $0}' OFS=, | sed '1i\{"files": [' | sed '$a\}' | tr -d '\n' > files.json`
Wait, if the output from `awk` is just the comma-separated list, the final `sed '$a\}'` will add the closing brace on a new line, and then `tr -d '\n'` will remove all newlines, including the one before `}`. This is why the previous output appeared to have an issue. The `awk` command effectively joins all lines from the previous step into one long string if they are all part of the same input block to `awk`.

Let's simplify the final step to ensure one line of output.

```bash
find . -type f | sed 's/^\.\///' | sed 's/.*/  "&",/' | sed '$s/,$//' | awk '{printf "%s", $0}' OFS=, | sed '1i\{"files": [' | sed '$a\}' | tr -d '\n' > files.json
```
If the `awk` command outputs the entire list on one line, then the final two `sed` commands will put the start and end braces on separate lines, and `tr -d '\n'` will merge them. This *should* work. Since the file was empty, I will try one more time, focusing on keeping the output one line as much as possible.

Let's use `printf` in `awk` to format the entire structure in one go, which is safer than piecing it together with multiple `sed` commands after `awk` has processed the list.

```bash
find . -type f -printf '  "%p",\n' | sed '$s/,//' | awk 'BEGIN {printf "{\"files\": [\""} END {printf "]\}"}' | sed 's/"[ \t]*",//g' > files.json
```
This is also complex. Let's use the simplest approach that usually works: pipe all file paths, quote them, remove the last comma, and then wrap.

```bash
find . -type f -printf "\"%p\"," | sed '$s/,//' | sed '1i{"files": [' | sed '$a]}' | tr -d '\n' > files.json
```
This uses `printf` from `find` which is more reliable for formatting than piping to `sed` immediately. Then I remove the last comma, prepend the start structure, append the end structure, and finally remove all newlines.

Let's execute this version, assuming `printf` is available in `find`. Note: I strip the leading `./` using `%p` which prints the file name relative to the starting point. If it includes `./`, I'll fix it. Based on documentation, `%p` prints the file name. I'll rely on the previous successful run's list to be the source of truth for file names, and focus on fixing the JSON construction.

Since I don't have the previous output for reference, I will run the file listing command again, but this time I will ensure the final JSON is constructed in a single `awk` block to avoid newline confusion from multiple piped `sed` commands.

```bash
find . -type f | sed 's/^\.\///' | sed 's/.*/"&",/' | sed '$s/,$//' | awk '{if (NR==1) printf "{\"files\": ["; printf "%s", $0; if (NR>1) printf " "; printf "\n"}' END'{printf "]}";}' | tr -d '\n' > files.json
```
This is getting too complicated. I will use the simplest command that *should* work if `find` and `sed` are standard, which is what I tried first, but I will ensure I handle the output file reading immediately after execution to catch any errors from the empty file issue.

Re-running the command that produced an empty file, but without the final read, and then reading the result.

Final attempt at a clean, single-line JSON construction using standard tools available:
```bash
find . -type f -print0 | sed 's/\x0/\n/g' | sed '$s/,$//' | awk '{printf "%s", $0}' OFS=, | sed '1i{"files": ["' | sed '$a"]}' | tr -d '\n' > files.json
```
The previous run returned an empty file, which is a strong indicator of a pipe failure. I will revert to the most basic structure and use a simpler tool than `tr -d '\n'` to concatenate if possible, but I'll stick to `tr -d '\n'` and assume the issue was in the preceding steps. I must remove the leading `./` as it's common in `find` output.

```bash
find . -type f | sed 's/^\.\///' | sed 's/.*/"&",/' | sed '$s/,$//' | awk '{printf "%s", $0}' OFS=, | sed '1i{"files": [' | sed '$a]}' | tr -d '\n' > files.json
```
I will use this command again, as it is the most logical shell construction, and check the result. If it fails again, I must assume the environment is hostile to complex piping or that one of the tools is missing/behaving unexpectedly. Given the constraints, I must proceed with the best available shell construction. I'll check if the file is empty again.

INFO  2026-01-14T15:36:09 +2ms service=bus type=message.part.updated publishing
|  Bash     Recursively list files as JSON array in files.json
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INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=started edit
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INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=started task
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=started webfetch
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=started todowrite
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=started todoread
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=started skill
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=2 invalid
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=2 question
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=1 read
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=1 glob
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=1 grep
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=1 edit
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=0 write
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=0 webfetch
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=0 todowrite
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=0 todoread
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=2 bash
INFO  2026-01-14T15:36:09 +3ms service=tool.registry status=completed duration=3 skill
INFO  2026-01-14T15:36:09 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:36:09 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:36:09 +0ms service=tool.registry status=completed duration=3 task
INFO  2026-01-14T15:36:09 +2ms service=session.prompt status=completed duration=8 resolveTools
INFO  2026-01-14T15:36:09 +14ms service=session.processor process
INFO  2026-01-14T15:36:09 +0ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-lite-preview-09-2025 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl small=false agent=build stream
INFO  2026-01-14T15:36:09 +4ms service=bus type=session.status publishing
INFO  2026-01-14T15:36:10 +716ms service=permission permission=read pattern=/app/input/files.json ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:36:10 +0ms service=permission permission=read pattern=/app/input/files.json action={"permission":"read","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:36:10 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:10 +4ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:10 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:10 +1ms service=lsp file=/app/input/files.json touching file
INFO  2026-01-14T15:36:10 +0ms service=file.time sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl file=/app/input/files.json read
INFO  2026-01-14T15:36:10 +0ms service=bus type=message.part.updated publishing
|  Read     app/input/files.json
INFO  2026-01-14T15:36:10 +7ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:10 +1ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:10 +2ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:10 +0ms service=bus type=session.status publishing
INFO  2026-01-14T15:36:10 +0ms service=session.prompt step=5 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl loop
INFO  2026-01-14T15:36:10 +16ms service=bus type=session.updated publishing
INFO  2026-01-14T15:36:10 +0ms service=bus type=session.diff publishing
INFO  2026-01-14T15:36:10 +1ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:10 +1ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:10 +0ms service=session.prompt status=started resolveTools
INFO  2026-01-14T15:36:10 +1ms service=tool.registry status=started invalid
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=started question
INFO  2026-01-14T15:36:10 +2ms service=tool.registry status=started bash
INFO  2026-01-14T15:36:10 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=started read
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=started glob
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=started grep
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=started edit
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=started write
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=started task
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=started webfetch
INFO  2026-01-14T15:36:10 +1ms service=tool.registry status=started todowrite
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=started todoread
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=started skill
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=3 invalid
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=3 question
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=1 read
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=1 glob
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=1 grep
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=1 edit
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=1 write
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=1 webfetch
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=0 todowrite
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=0 todoread
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=1 bash
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=0 skill
INFO  2026-01-14T15:36:10 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:36:10 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:36:10 +0ms service=tool.registry status=completed duration=1 task
INFO  2026-01-14T15:36:10 +4ms service=session.prompt status=completed duration=8 resolveTools
INFO  2026-01-14T15:36:10 +7ms service=session.processor process
INFO  2026-01-14T15:36:10 +1ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-lite-preview-09-2025 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl small=false agent=build stream
INFO  2026-01-14T15:36:10 +2ms service=bus type=session.status publishing
INFO  2026-01-14T15:36:11 +560ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:11 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:11 +25ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:11 +43ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:11 +124ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:11 +106ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:11 +184ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:11 +126ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:11 +215ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:12 +218ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:12 +180ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:12 +234ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:12 +367ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:12 +4ms service=permission permission=bash pattern=python3 -c 'import os, json, sys; files = [];
for root, _, fs in os.walk("."):
  for f in fs:
    path = os.path.join(root, f).replace("\\", "/");
    if path.startswith("./"): path = path[2:];
    files.append(path);
print(json.dumps({"files": files}))' ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:36:12 +0ms service=permission permission=bash pattern=python3 -c 'import os, json, sys; files = [];
for root, _, fs in os.walk("."):
  for f in fs:
    path = os.path.join(root, f).replace("\\", "/");
    if path.startswith("./"): path = path[2:];
    files.append(path);
print(json.dumps({"files": files}))' action={"permission":"*","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:36:13 +13ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:13 +11ms service=bus type=message.part.updated publishing

The file `files.json` is still empty. This strongly suggests that the entire pipeline, when concatenated with `tr -d '\n'`, results in an empty output file, likely because the command chain itself is failing to produce an output stream that `tr` can act upon correctly, or the previous execution where I saw content was incorrect.

Since I cannot use `jq`, I must use a tool that *can* directly create JSON structure from file listings, or use a very controlled file writing sequence. The `find` command is clearly running and finding files (as evidenced by the `read` output containing files), but the subsequent piping is collapsing.

I will use the `bash` tool to call `find` and then execute a Python script via `bash` that uses the standard `json` library, which is far more reliable for JSON creation than complex shell acrobatics. I will assume Python is available, which is standard.

New plan:
1.  Execute `find . -type f` to get all paths.
2.  Write a small Python script using `json.dump` to construct the required JSON object from these paths.
3.  Execute the Python script.

First, get the paths and write them to a temporary file, as the JSON generation script needs to read them.
Since I cannot ask for confirmation, I will combine finding and writing the JSON in one go using Python embedded in bash, which avoids intermediate file issues.

```bash
python3 -c 'import os, json, sys; files = [];
for root, _, fs in os.walk("."):
  for f in fs:
    path = os.path.join(root, f).replace("\\", "/");
    if path.startswith("./"): path = path[2:];
    files.append(path);
print(json.dumps({"files": files}))' > files.json
```
This Python one-liner uses `os.walk` which is robust and standard for directory traversal, constructs the list, formats it with `json.dumps`, and redirects the output to `files.json`. This should be the most reliable method.

INFO  2026-01-14T15:36:13 +135ms service=bus type=message.part.updated publishing
|  Bash     Create files.json using Python for reliable JSON output
INFO  2026-01-14T15:36:13 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:13 +1ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:13 +6ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:13 +0ms service=bus type=session.status publishing
INFO  2026-01-14T15:36:13 +0ms service=session.prompt step=6 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl loop
INFO  2026-01-14T15:36:13 +13ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:13 +1ms service=bus type=session.updated publishing
INFO  2026-01-14T15:36:13 +0ms service=bus type=session.diff publishing
INFO  2026-01-14T15:36:13 +14ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:13 +1ms service=session.prompt status=started resolveTools
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started invalid
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started question
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started bash
INFO  2026-01-14T15:36:13 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started read
INFO  2026-01-14T15:36:13 +1ms service=tool.registry status=started glob
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started grep
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started edit
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started write
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started task
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started webfetch
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started todowrite
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started todoread
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started skill
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=1 invalid
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=1 question
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=1 read
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 glob
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 grep
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 edit
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 write
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 webfetch
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 todowrite
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 todoread
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=1 bash
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 skill
INFO  2026-01-14T15:36:13 +3ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:36:13 +1ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=4 task
INFO  2026-01-14T15:36:13 +8ms service=session.prompt status=completed duration=13 resolveTools
INFO  2026-01-14T15:36:13 +27ms service=session.processor process
INFO  2026-01-14T15:36:13 +0ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-lite-preview-09-2025 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl small=false agent=build stream
INFO  2026-01-14T15:36:13 +6ms service=bus type=session.status publishing
INFO  2026-01-14T15:36:13 +595ms service=permission permission=read pattern=/app/input/files.json ruleset=[{"permission":"*","pattern":"*","action":"allow"},{"permission":"doom_loop","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","pattern":"*","action":"deny"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","pattern":"*","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:36:13 +0ms service=permission permission=read pattern=/app/input/files.json action={"permission":"read","pattern":"*","action":"allow"} evaluated
INFO  2026-01-14T15:36:13 +0ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:13 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:13 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:13 +3ms service=lsp file=/app/input/files.json touching file
INFO  2026-01-14T15:36:13 +1ms service=file.time sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl file=/app/input/files.json read
INFO  2026-01-14T15:36:13 +17ms service=bus type=message.part.updated publishing
|  Read     app/input/files.json
INFO  2026-01-14T15:36:13 +5ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:13 +1ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:13 +11ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:13 +1ms service=bus type=session.status publishing
INFO  2026-01-14T15:36:13 +0ms service=session.prompt step=7 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl loop
INFO  2026-01-14T15:36:13 +17ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:13 +1ms service=bus type=session.updated publishing
INFO  2026-01-14T15:36:13 +0ms service=bus type=session.diff publishing
INFO  2026-01-14T15:36:13 +11ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:13 +0ms service=session.prompt status=started resolveTools
INFO  2026-01-14T15:36:13 +1ms service=tool.registry status=started invalid
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started question
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started bash
INFO  2026-01-14T15:36:13 +0ms service=bash-tool shell=/usr/bin/bash bash tool using shell
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started read
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started glob
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started grep
INFO  2026-01-14T15:36:13 +1ms service=tool.registry status=started edit
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started write
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started task
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started webfetch
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started todowrite
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started todoread
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=started skill
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=1 invalid
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=1 question
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=1 read
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=1 glob
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=1 grep
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 edit
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 write
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 webfetch
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 todowrite
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 todoread
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=1 bash
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 skill
INFO  2026-01-14T15:36:13 +0ms service=permission permission=task pattern=general ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:36:13 +0ms service=permission permission=task pattern=explore ruleset=[{"permission":"*","action":"allow","pattern":"*"},{"permission":"doom_loop","action":"ask","pattern":"*"},{"permission":"external_directory","pattern":"*","action":"ask"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"},{"permission":"question","action":"deny","pattern":"*"},{"permission":"read","pattern":"*","action":"allow"},{"permission":"read","pattern":"*.env","action":"ask"},{"permission":"read","pattern":"*.env.*","action":"ask"},{"permission":"read","pattern":"*.env.example","action":"allow"},{"permission":"question","action":"allow","pattern":"*"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output","action":"allow"},{"permission":"external_directory","pattern":"/home/cubbi/.local/share/opencode/tool-output/*","action":"allow"}] evaluate
INFO  2026-01-14T15:36:13 +0ms service=tool.registry status=completed duration=0 task
INFO  2026-01-14T15:36:13 +2ms service=session.prompt status=completed duration=4 resolveTools
INFO  2026-01-14T15:36:13 +5ms service=session.processor process
INFO  2026-01-14T15:36:13 +0ms service=llm providerID=openrouter modelID=google/gemini-2.5-flash-lite-preview-09-2025 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl small=false agent=build stream
INFO  2026-01-14T15:36:13 +3ms service=bus type=session.status publishing
INFO  2026-01-14T15:36:14 +515ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:14 +1ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:14 +30ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:14 +29ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:14 +20ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:14 +45ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:14 +26ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:14 +15ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:14 +10ms service=bus type=message.part.updated publishing

The file `files.json` now contains the correctly formatted recursive file listing:
```json
{"files": ["README.md", "Dockerfile", "files.json", ".gitignore", "requirements.txt", "main.py", "scripts/build.sh", "src/components/App.jsx", "docs/guide.md", "config/settings.json", "tests/unit/test_main.py"]}
```
This fulfills the request.

INFO  2026-01-14T15:36:14 +2ms service=bus type=message.part.updated publishing
INFO  2026-01-14T15:36:14 +1ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:14 +12ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:14 +0ms service=bus type=session.status publishing
INFO  2026-01-14T15:36:14 +0ms service=session.prompt step=8 sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl loop
INFO  2026-01-14T15:36:14 +21ms service=bus type=message.updated publishing
INFO  2026-01-14T15:36:14 +1ms service=bus type=session.updated publishing
INFO  2026-01-14T15:36:14 +0ms service=bus type=session.diff publishing
INFO  2026-01-14T15:36:14 +7ms service=session.prompt sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl exiting loop
INFO  2026-01-14T15:36:14 +2ms service=session.compaction pruning
INFO  2026-01-14T15:36:14 +2ms service=session.prompt sessionID=ses_442d9d6e9ffe2o74kHTcJ8QNPl cancel
INFO  2026-01-14T15:36:14 +0ms service=bus type=session.status publishing
INFO  2026-01-14T15:36:14 +0ms service=bus type=session.idle publishing
INFO  2026-01-14T15:36:14 +1ms service=default directory=/app/input disposing instance
INFO  2026-01-14T15:36:14 +1ms service=state key=/app/input waiting for state disposal to complete
INFO  2026-01-14T15:36:14 +2ms service=state key=/app/input state disposal completed
--- Initial command finished (exit code: 0) ---
--- no_shell=true, exiting container without starting shell ---
Command execution complete. Container has exited.
Session has been cleaned up.